Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00348 ATGGCTGGTCGTATATTTGAAACTTTGTCCTTTGGTGGGTCTCAACATGGTCAAGGTAATCAATCTTTGCCATTTTCATCTGGAAATACTTCATTGAAGATCTTACTGTTACATGGTTATTTAGACATATGGGTTAAGGAAGCTAAGAACCTTCCCAATTTGGATATGTTTCACAAGACTCTTGGAGATATGTTTTCAAAAGTGTCTTTTAAGGGTTCAAAAAACAGTAATGGGGAAAAGCCTCAAAAAGTTACTAGTGATCCTTATGTGACTATTTCTGTATCAAATGCTGTAATTGGAAGGACTTTTGTGATTGATAATAGTGAAAATCCTGTTTGGATGCAACATTTTGATATCCCTGTTGCTCACTATGGTGCTGAAGTGCATTTTGTTGTTAAAGACCATGATGTTGTAGGTTCACAAATCATGGGTGTTGTTGCAATTCCTGTTGAACAATTGTATTCAGGAGCCATAGTTGAAGGAACCTACCCAATTTTGAATAGTAGTAGGAAGCCCTGTAAGCCTGGGGCAGTCTTGAGTTTGTCGATTCAGTATACTCCGGCTGACCGTGCGGCCATTTTTCGAGGTGGAATGTATGCGTCTCCTGACCATCAGGGAGTTTTATGCACATATTTTCCTCTTAGGAAGGGGGGTAAAGTTACATTGTACCAAGATGCTCATGTTGAAGAGGGTTGTCTTCCAACAGACTATAGGCTTCATGGTGGAGTTCAATATGAACATAGGAGCTGTTGGGACGATATCACTGAATCGATCAGTCAGGCTCGCCGTTTGATCTATATTACGGGCTGGTCTGTTTACCATAGTGTTAAATTGGTTAGAGATGGGACAAGAAAAGAATGCATACTAGGGGACCTTCTTAAAGCCAAGTCCCAAGAAGGAGTAAGAGTCTTGCTTCTTATATGGGATGATCCAACTTCAACTAGTATGTTGGGATATAAAACGGTTGGGATGATGAATACAAATGATGAGGAGACTCGTCGATTCTTTAAGAACTCGTCAGTCCAAGTGGTTTTGTGCCCACGGTCCGGGGGAAAAGGTCATAGTTGGCTTAAAAAACAGGAAGCTGGAACCATCTATACTCACCATCAGAAGACAGTTATTGTAGATGCTGATGCTGGAAATTACAGAAGAAAAATTGTAGCTTTTGTTGGAGGTCTTGATTTATGTTTGGGCCGATATGATACCTCAAGACATCCTCTTTTCCGGACATTGCAAACTACACATGTGGATGACTTCCATAACCCTAACTTTACGGGTCCAACTACTGGCTGTCCAAGAGAACCATGGCATGATTTGCACTCTAAGATTGACGGTCCAGCGGCATATGACGTACTTGCAAATTTTGAGGAGCGTTGGATGAGAGCTTCAGAGCCTCATGGCCTTAAAAAGCTAAAGAAGTTACATGAAGATGTATTACTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATTGCTGATGTTTCTCAAATATGTAATAATGATCCAGAAGGTTGGAACGTCCAGATTTTTCGCTCAATCGATTCCAACTCCGTAAAAGGGTTTCCTGACAAGCCAAAAGATGCCATAAGTAGGAACTTAGTATGTGGAAAGAATGTGATGATAGACTCGAGTATACATTCAGCGTATGTTAGTGCAATTCGAGCTGCTCAACGCTTCATTTACATTGAAAACCAATACTTCCTTGGGTCATCTTATAATTGGAGTGCTCACAAAGACTTGGGGGCTAATAACTTAATACCAATGGAAATAGCCCTTAAGATTGTGGAGAAAATCAAAGCTAAAGAAAGATTTTCAGCTTATGTGGTTATTCCAATGTGGCCAGAAGGTGTTCCTACAAGCACTCCTATTCAAAGAATTCTTTTCTGGCAGAGTAGGACAATGCAAATGATGTATGAAATGATATATCAAGCGTTAGAGGAGGTTGGACTTCACAAAACATATGAACCTCAAGACTACTTAAATTTCTTTTGTCTTGGAAACCGTGAGATGCTCGATGTGAGAGACGGTGTTGAAGCCGGGAATGGAGAAAAGAATGCTCAATCACTTGTTCGTAAGAGTCGACGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTAGATGATGAGTACGTCTTACTAGGATCAGCAAATATCAATCAACGCTCCCTTGAAGGCACCAGAGACACTGAAATAGCAATGGGCGCATATCAATCTCGTCATACATGGTCATCAACCAAACGCTCAAGCCCACGTGGTCAGGTGTTTGGATATAGAATGTCATTATGGGCAGAGCACACAGGAACAATGGAGGAATGTTTTGAAAGACCAGAGAGTATTGAATGTGTAAGAAGAATGAGGTCATTGGGTGAGAGAAATTGGAAACAATATGCAGCTGAGGAAGTGAGTGAAATGAGAAGTCATCTTCTTAAATATCCATTAAAAGTTGATCCAACTGGTAAGGTCACTCATCTTCCTGGCTCTGAATCCTTCCCTGACCTTGGTGGCAACATATTGGGAACATTCACAGTCATACAAGAAAACCTTACAATTTGA 2556 40.38 MAGRIFETLSFGGSQHGQGNQSLPFSSGNTSLKILLLHGYLDIWVKEAKNLPNLDMFHKTLGDMFSKVSFKGSKNSNGEKPQKVTSDPYVTISVSNAVIGRTFVIDNSENPVWMQHFDIPVAHYGAEVHFVVKDHDVVGSQIMGVVAIPVEQLYSGAIVEGTYPILNSSRKPCKPGAVLSLSIQYTPADRAAIFRGGMYASPDHQGVLCTYFPLRKGGKVTLYQDAHVEEGCLPTDYRLHGGVQYEHRSCWDDITESISQARRLIYITGWSVYHSVKLVRDGTRKECILGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTNDEETRRFFKNSSVQVVLCPRSGGKGHSWLKKQEAGTIYTHHQKTVIVDADAGNYRRKIVAFVGGLDLCLGRYDTSRHPLFRTLQTTHVDDFHNPNFTGPTTGCPREPWHDLHSKIDGPAAYDVLANFEERWMRASEPHGLKKLKKLHEDVLLKIERIPEILGIADVSQICNNDPEGWNVQIFRSIDSNSVKGFPDKPKDAISRNLVCGKNVMIDSSIHSAYVSAIRAAQRFIYIENQYFLGSSYNWSAHKDLGANNLIPMEIALKIVEKIKAKERFSAYVVIPMWPEGVPTSTPIQRILFWQSRTMQMMYEMIYQALEEVGLHKTYEPQDYLNFFCLGNREMLDVRDGVEAGNGEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVLLGSANINQRSLEGTRDTEIAMGAYQSRHTWSSTKRSSPRGQVFGYRMSLWAEHTGTMEECFERPESIECVRRMRSLGERNWKQYAAEEVSEMRSHLLKYPLKVDPTGKVTHLPGSESFPDLGGNILGTFTVIQENLTI* 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2867950 2874258 + CsaV3_3G003480.1 Csa03g00348 521253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00348 851 Pfam Phospholipase D C terminal 771 841 IPR024632 -
Csa03g00348 851 SMART C2_3c 40 162 IPR000008 -
Csa03g00348 851 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 187 IPR035892 -
Csa03g00348 851 SUPERFAMILY Phospholipase D/nuclease 545 783 - -
Csa03g00348 851 ProSiteProfiles C2 domain profile. 15 163 IPR000008 -
Csa03g00348 851 Pfam C2 domain 39 165 IPR000008 -
Csa03g00348 851 Gene3D C2 domain 34 171 IPR035892 -
Csa03g00348 851 SUPERFAMILY Phospholipase D/nuclease 210 463 - -
Csa03g00348 851 Gene3D Endonuclease Chain A 238 479 - -
Csa03g00348 851 PIRSF PLD_plant 26 851 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Csa03g00348 851 Gene3D Endonuclease Chain A 507 750 - -
Csa03g00348 851 SMART pld_4 364 399 IPR001736 GO:0003824
Csa03g00348 851 SMART pld_4 696 723 IPR001736 GO:0003824
Csa03g00348 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 364 399 IPR001736 GO:0003824
Csa03g00348 851 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 6 851 - -
Csa03g00348 851 CDD C2_plant_PLD 35 186 - -
Csa03g00348 851 Pfam Phospholipase D Active site motif 697 723 IPR001736 GO:0003824
Csa03g00348 851 Pfam Phospholipase D Active site motif 365 399 IPR001736 GO:0003824
Csa03g00348 851 PANTHER PHOSPHOLIPASE D 6 851 IPR015679 -
Csa03g00348 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 696 723 IPR001736 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00348 Csa-Chr3:2867950 Csa06g00598 Csa-Chr6:5064048 0 dispersed
Csa03g00348 Csa-Chr3:2867950 Csa02g02386 Csa-Chr2:21161532 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00348 K01115 - csv:101208016 1744.94