Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00353 ATGGCGTCTTCTTCAGGCAGCAGTAGCAACTACGACATTCCATGGGTGGAGAAGTACAGGCCCAACAAGGTCACCGACATTGTGGGTAATGAAGATGCAGTTTCTCGTCTCCAAGTCATTGCTCGGGACGGCAACATGCCCAATCTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTTTGGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTCGTGAGGAACAAAATCAAGATGTTTGCTCAAAAGAAAGTAACATTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATTTATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTGATTCAGGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGCTGAATAATTTGCAAGCTACACATAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGCGATCAACCACATCCGCTGCATGTGAAGAATGTGGTACGCAATGTGCTTGAAGGTAAATTTGATGATGCTTGTACAGGCCTGAGGCAACTCTACGACTTAGGCTATTCCCCCACTGACATAATAACCACTCTTTTCCGAATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATCTGTGATGGTGTCGGTTCTTACCTTCAACTATGTGGTCTTTTGGCCAAGCTTTCCATGGTTCGTGAGACTGCAAAAGCACCATGA 996 44.18 MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2912245 2917646 - CsaV3_3G003530.1 Csa03g00353 521258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00353 331 PANTHER REPLICATION FACTOR C SUBUNIT 2 6 329 - -
Csa03g00353 331 CDD HLD_clamp_RFC 170 232 - -
Csa03g00353 331 Gene3D - 171 234 - -
Csa03g00353 331 Pfam ATPase family associated with various cellular activities (AAA) 49 167 IPR003959 GO:0005524|GO:0016887
Csa03g00353 331 Gene3D - 235 327 - -
Csa03g00353 331 SUPERFAMILY post-AAA+ oligomerization domain-like 234 325 IPR008921 GO:0003677|GO:0006260
Csa03g00353 331 CDD AAA 28 165 - -
Csa03g00353 331 Pfam Replication factor C C-terminal domain 235 320 IPR013748 -
Csa03g00353 331 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 329 - -
Csa03g00353 331 Gene3D - 7 170 IPR027417 -
Csa03g00353 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 233 IPR027417 -
Csa03g00353 331 SMART AAA_5 45 177 IPR003593 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00353 Csa-Chr3:2912245 Csa06g02139 Csa-Chr6:19120488 1.57E-70 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00353 K10755 - csv:101208984 659.448