Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00354 ATGGCATCTTCAAGGTCCCCGAATGGATCTTCCGATGATATTCTCGATACCTCCCCTTTGATGGGGACTCCGAATCGGTCGTTGGACGATACGCATTCGGGTCGGAGATTTGTGCAGAGGCAAAGTTTGCGTCAGGCGGCGAGGTTTCTTAGGCAAGCTAGTAATCGGAGGACGATGCGTGAGCCGTCTATGTTGGTAAGAGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTCATCCTTGATATCGTTTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCATTTTGGTTCTCAGCCGTAACGAGTCTCCTTCAATGCCTTTGAGACTGTGGATCGTGGGGTATGCGTTTCAATGTATTCTTCATATGGTATGCGTTTGTGTTGAGTATCGTCGTCGCCGACAGCTACGATATTCGGCCTTTAGTTCGATGGAGGAGGGAAATTCTGCACGCTCGATTTCGGGATTGGGGTCGAGGGCAAACTCGAGTCATTATGTATCATTGGCTCAATTGGATGAGAACGATAGCAGTGTAGCAAAGCACCTTGAATCTGCAAATACAATGTTCTCCTTCATCTGGTGGATTATTGGATTCTATTGGGTATCTGCAGGAGGACAATCTTTAGCACAGGCCTCTCCCCTGCTTTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCTTGTATCATTGCACTTTTATATGCTGTAGCGGACCAGGAAGGAGCGACCAAAGAAGATGTCGAACAGTTGTCAAAATTTAAATTCAGAAAGGTTGAAAACACCGAGAAATTCTCCACTGATGTACAGGAACCTCTCGGTGGGGTAATGTCTGAGTGTTGTACAGATTCACCCATTGAACGCCCCCTCTTGCAAGAGGATGCGGAGTGTTGCATCTGCCTTTCTGCATACGAGGATGGTGTCGAGCTACGAGAGCTCCCATGTGGTCATCACTTCCACTGTGCATGCGTCGATAAATGGCTGTATATTAATGCCACCTGTCCTCTCTGCAAGTACAACATCTTGAAAAATAGCAATCTTGCTCAAGAGGAAGTTTGA 1152 46.7 MASSRSPNGSSDDILDTSPLMGTPNRSLDDTHSGRRFVQRQSLRQAARFLRQASNRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATILVLSRNESPSMPLRLWIVGYAFQCILHMVCVCVEYRRRRQLRYSAFSSMEEGNSARSISGLGSRANSSHYVSLAQLDENDSSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAQASPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVENTEKFSTDVQEPLGGVMSECCTDSPIERPLLQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKNSNLAQEEV* 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2918898 2924615 + CsaV3_3G003540.1 Csa03g00354 521259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00354 383 CDD RING-H2_RNF111_like 327 371 - -
Csa03g00354 383 SUPERFAMILY RING/U-box 319 375 - -
Csa03g00354 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Csa03g00354 383 SMART ring_2 328 368 IPR001841 -
Csa03g00354 383 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 383 - -
Csa03g00354 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 375 IPR013083 -
Csa03g00354 383 MobiDBLite consensus disorder prediction 1 28 - -
Csa03g00354 383 Pfam Ring finger domain 327 369 IPR001841 -
Csa03g00354 383 PANTHER TARGET OF ERK KINASE MPK-1 6 383 - -
Csa03g00354 383 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00354 Csa-Chr3:2918898 Csa03g00920 Csa-Chr3:7573115 9.10E-165 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00354 - - csv:101209228 761.911