Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00358 ATGGCGATGCGTGACTTGGTTACCGGTGGAGCTGATTGTGCTGTTCCTGGTTCTTCTTCTTCTAATCCACTCGGTGCTCTTGCCAACGCTCTAATTGGCTCCTCTTCCAAGACCCAGGAAAGGTTACGGGAAATTCCTACATCGCAGCTCACAGGTCCTGGAAGGCCTTTTGCCCCTGAGACTCATGGGCAGCTTCCTGGGTCTGAGTTTGATCACCCACCGCTTCAACCCAATCAGCAGGCGTCTAATTTTTTGAATGCCTTTCACTCGGCTGCTGATCCTGGTCTGGCCTCTGCATGGAATGAGGTTCAGGCTGGTCCTCCTCCTGCCCACTTGAGGGAAATGCAACCAAGTCTTGCTGAATTTGATCGAATTTATGACCAAGTACCTGGTTCTCAGCATCAACCGATTTTGGATGGGCCACCGCAGAGAGTGCTGTCAACCTTTTTGCACTCATTTGTAGAAAGTAGCCGTGGCGGAGTGCCTTTTCATCCAACACCTCTGCCTTTATTGGGACTATCTGAGGGTGATAAACAATGTATACGAGATCGTAGTAGCATAATGGCTCGACATTTTTTTGCAGATAAGAGTGAAGACTTCATAAATGCACAGTTAAATGCACTTCTATCTTCCTTGGACATCGACACCAGTAAACAGGTTGGGGGGCCTCAACCTGGTAGGTTCCGCGAGATGGAGGATTATTGGAATGAATCTCAAGCTCTCCAGAGACCTGGTGGTCATGTTGCAGATGGGTGGGCTTCTGAATATAGCCTAAACAGGGAAAAGTTTGCTGATCATGACGCTTGGGCTCAATCCTTTGAACAACAATATGGTGCCAATGGTTGGGCCTCTGAGTTTGAGCAGGAGAAGTTTCAGTTAGCATCGGCACAAAATATGGCAGGTGGTAATATGATGAACTTATCTGCAATGGAGCAGACTCGCAAGCTTGCAAATACATTAGCTGAAAACAATGACCCTAAATTCCAGAACTCAAAGTTTCTTCAGTTTGTTTCAAAGATGAGTAGGGGTGAACTTATTATTGATGACAATCAAGTCAAGCCAAACTCTTTATCTCCAACAGATAACTGGGCTTCCGAGTATCAGCAACAGTATAGTGGGGGTCTTCCCTGGGCTGATGAATTTGTTTCTAATCAAACTAATCGGTGGGCTGATGAGTTTGCTGAAGAGAAGCAAAATGTGTCGAATGATCCATGGGTAAATGAATTTTCCAAGTTGCACATGCAAGACTGGGTGGAAGAATTTGGTCAGCAGGTTGGAGAAGGGGTTTCTGGAGAAGCAGATAATTGGGCAAATGCATACGATGAGTTCGTAAATGAACAAGTAGCTGCCAAAGGAAAAATGGATGCTTCCAAGGGGATATACGTCTTTTCTGATATGAACCCATATGTCGGTCATCCTAATCCCTTGAAGGAAGGTCAGGATCTGTTCCGTAAAGGCCTTCTGAGTGAGGCAGTGCTTGCTTTAGAGGCTGAAGTTATGAAAAACCCTGAAAATTCGGAAGGTTGGAGGCTTCTTGGAATTGCACATGCTGAAAACGATGATGATCAACAGGCTATTGCTGCAATGAAGCGGGCACTGGACGTTGACCCTACAAACTTAGAGGTGCTTCTTGCACTTGGTGTGAGTCACACAAATGAACTAGAGCAAGCTGCTGCATTAAGATACTTGTATGGATGGTTACAGCATCACCCAAAGTACGGAACACTTGCAAAACCAGAGCTTTCTGATTCATTGTACTACGCTGATGTAGCCGGCTTATTTAACGAAGCTGCACAAATGTTTCCTGATGATGCTGATGTGCACATAGTACTTGGTGTCCTTTATAATTTGTCCAGAGAATTTGACAAAGCAATTGCATCCTTTCAAACAGCCTTGAAATTGAAGCCGCAAGATTACTCTCTTTGGAACAAGCTAGGTGCTACACAAGCTAACAGTATCCAAAGCGCTGATGCTATATTAGCTTATCAACAGGCACTTGATTTGAAGCCTAATTATGTACGTGCCTGGGCCAATATGGGAATCAGTTATGCCAATCAGGGGCTCTATGAGGAATCAATTAAGTACTATGTGAGGTCACTTAGCATGAATCCAAAGGCAGACAATGCGTGGCAATATTTAAGAATTTCACTAAGCTGTGCATCAAGGAATGACATGCTGGAAGCCTGTGATTCCCGCAATCTTGATGCCCTTCAAAAGGAGTTCCCATTATGA 2232 44.89 MAMRDLVTGGADCAVPGSSSSNPLGALANALIGSSSKTQERLREIPTSQLTGPGRPFAPETHGQLPGSEFDHPPLQPNQQASNFLNAFHSAADPGLASAWNEVQAGPPPAHLREMQPSLAEFDRIYDQVPGSQHQPILDGPPQRVLSTFLHSFVESSRGGVPFHPTPLPLLGLSEGDKQCIRDRSSIMARHFFADKSEDFINAQLNALLSSLDIDTSKQVGGPQPGRFREMEDYWNESQALQRPGGHVADGWASEYSLNREKFADHDAWAQSFEQQYGANGWASEFEQEKFQLASAQNMAGGNMMNLSAMEQTRKLANTLAENNDPKFQNSKFLQFVSKMSRGELIIDDNQVKPNSLSPTDNWASEYQQQYSGGLPWADEFVSNQTNRWADEFAEEKQNVSNDPWVNEFSKLHMQDWVEEFGQQVGEGVSGEADNWANAYDEFVNEQVAAKGKMDASKGIYVFSDMNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVMKNPENSEGWRLLGIAHAENDDDQQAIAAMKRALDVDPTNLEVLLALGVSHTNELEQAAALRYLYGWLQHHPKYGTLAKPELSDSLYYADVAGLFNEAAQMFPDDADVHIVLGVLYNLSREFDKAIASFQTALKLKPQDYSLWNKLGATQANSIQSADAILAYQQALDLKPNYVRAWANMGISYANQGLYEESIKYYVRSLSMNPKADNAWQYLRISLSCASRNDMLEACDSRNLDALQKEFPL* 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2971193 2983973 + CsaV3_3G003580.1 Csa03g00358 521263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00358 743 PANTHER BNAC09G53570D PROTEIN 1 743 - -
Csa03g00358 743 MobiDBLite consensus disorder prediction 35 80 - -
Csa03g00358 743 ProSiteProfiles TPR repeat profile. 605 638 IPR019734 GO:0005515
Csa03g00358 743 Pfam Tetratricopeptide repeat 591 638 - -
Csa03g00358 743 Pfam Tetratricopeptide repeat 476 538 - -
Csa03g00358 743 ProSiteProfiles TPR repeat profile. 506 539 IPR019734 GO:0005515
Csa03g00358 743 ProSiteProfiles TPR repeat profile. 639 672 IPR019734 GO:0005515
Csa03g00358 743 Pfam Tetratricopeptide repeat 674 705 IPR001440 GO:0005515
Csa03g00358 743 SUPERFAMILY TPR-like 458 743 IPR011990 GO:0005515
Csa03g00358 743 SMART tpr_5 506 539 IPR019734 GO:0005515
Csa03g00358 743 SMART tpr_5 639 672 IPR019734 GO:0005515
Csa03g00358 743 SMART tpr_5 605 638 IPR019734 GO:0005515
Csa03g00358 743 SMART tpr_5 673 706 IPR019734 GO:0005515
Csa03g00358 743 Gene3D Tetratricopeptide repeat domain 453 743 IPR011990 GO:0005515
Csa03g00358 743 ProSiteProfiles TPR repeat region circular profile. 673 705 - -
Csa03g00358 743 ProSiteProfiles TPR repeat profile. 673 706 IPR019734 GO:0005515
Csa03g00358 743 ProSiteProfiles TPR repeat region circular profile. 605 638 - -
Csa03g00358 743 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 743 IPR024111 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00358 K13342 PEX5, PXR1; peroxin-5 - csv:101209718 1509.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00358 Csa-Chr3:2971193 Csa06g02699 Csa-Chr6:23661388 6.15E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g800 . . . . Bpe09g00092 . . Bma13g01149 Cmo16g01055 . . . . . . . . . . . . . . . Cla10g00338 Cam10g0351 Cec10g0364 Cco10g0359 Clacu10g0352 Cmu10g1188 Cre10g0599 . . Cone14ag1279 Cone15ag1306 . Csa03g00358 . Cme06g02675 Blo07g00850 . Bda05g00656 Bda12g00995 . Bpe03g00732 . . Sed08g2850 . . . . . . Cpe14g00832 . Bhi11g00375 Tan01g1931 Cmetu06g1763 . Hepe06g1219 Mch10g1459 . . . . . . . . . . Chy06g01965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004195 3 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00358 Csa_Chr03 FPKM 2.156526 2.311999 0.0 0.0 7.041852 6.914165 6.215319 0.112728 0.0 0.0