Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00359 ATGCGTCAATTACTTATCCGTTGTGCTCATTTTATTTCTCAATCTGATTTCATTTCAGCTCATCATCTTCTTTCAATTCTTTCTTCAAATTCCTCTCCTTATGGTGATTCAACTCAAAGATTACTCCATTATTTCTCTTCTTCCCTTTCTCATCTCCTCCCTTCATCAAATTATAATTCATCTTTTCATCATCATCATCACGACATTGAAAAGATTCAATCTTGTTACTTATCATTGAATCAAATCACGCCCTTTATTAGATTCACTCATTTAACTGCAAATCAAGCCATTTTAGAAGGTATTGAAGAAAGTGGTATGATTCATGTTTTGGATTTCGATATTATGCATGGTGTTCAATGGCCTCCTCTTATGCAAGCTTTGGCTGATCGTTTTCCTTCTCCTATGCTTCGTATTACTGCCACTGGTGTTGATCTTAATTTCCTTCATAAGACTGGTGATAGACTCTCAAAATTTGCCCAATCACTTGGTTTGAGGTTTCAGTTTCACCCTTTGCTTCTTCTTCATGATCGTGATCATCATCGCGTTATCCCTGCTGCTCTTACCCTCTTCCCCGATGAAGCTCTCGCCGTTAACTGCGTACTCTACTTGCACAGGTTAATGAAGGACGATGTTCGAGTATTGCTTAATAAAATCAAGGCTTTGAATCCAAAAGTGGTGACAATAGCTGAAAAGGAAGCAAATTTCAACCATCCATTATTCATGCAAAGATTTGTAGAGGCATTGAATCATTACACTTTATTATTTGATTCATTAGAAGCAACTTTACCTCCAAACAGTAGGGAGAGATTGGCAGTGGAGCAAGTTTGGTTTGGGAGGGAAATAAACGACATCGTTTCAGGAGAAGTGAATAAGAAAAAACAACACTATGCTGAAAGGTATGAATCATGGGAAACAATGCTTAAAAGTTTAGGGTTTTCTAATATTCCTTTAAGCCCTTTTGCTCTTTCACAAGCTAAACTCCTTCTTAGACTTCATTATCCTTCTGAAGGTTATCATCTCCAAATCCTTCATGATTCCCTTTTTCTTGGTTGGCAAAATCAACCCCTCTTTTCAGTCTCTTCATGGCATTGA 1092 37.27 MRQLLIRCAHFISQSDFISAHHLLSILSSNSSPYGDSTQRLLHYFSSSLSHLLPSSNYNSSFHHHHHDIEKIQSCYLSLNQITPFIRFTHLTANQAILEGIEESGMIHVLDFDIMHGVQWPPLMQALADRFPSPMLRITATGVDLNFLHKTGDRLSKFAQSLGLRFQFHPLLLLHDRDHHRVIPAALTLFPDEALAVNCVLYLHRLMKDDVRVLLNKIKALNPKVVTIAEKEANFNHPLFMQRFVEALNHYTLLFDSLEATLPPNSRERLAVEQVWFGREINDIVSGEVNKKKQHYAERYESWETMLKSLGFSNIPLSPFALSQAKLLLRLHYPSEGYHLQILHDSLFLGWQNQPLFSVSSWH* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2994784 2997024 - CsaV3_3G003590.1 Csa03g00359 521264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00359 363 PANTHER SCARECROW-LIKE PROTEIN 18 1 363 IPR030017 GO:0005634|GO:0010223
Csa03g00359 363 Pfam GRAS domain family 1 362 IPR005202 -
Csa03g00359 363 ProSiteProfiles GRAS family profile. 1 363 IPR005202 -
Csa03g00359 363 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 363 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00359 Csa-Chr3:2994784 Csa02g02578 Csa-Chr2:22508174 1.22E-74 dispersed
Csa03g00359 Csa-Chr3:2994784 Csa03g00440 Csa-Chr3:3721517 3.36E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31095 PF03514 GRAS 1.40E-115 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00359 - - csv:101213853 696.041