Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00371 ATGGCCTCTACATCCTCCAAGAGACATGATCACTACAAAGGAATCCGCTGCCGGGGTGGCAAATGGGTCTCCGAGATTCGTGAGCCACGTAAGACTAATCGAATATGGCTCGGCACCTACCCTACACCCGAAATGGCTGCTGCTGCCTACGACGTAGCCGCACTCGCACTCAAGGGTTGCAATGCCGTTCTCAACTTCCCCAACTCAGTTGCCTTCTACCCGGTTCCTGCTTCCACATCCCCCAATGATATCCGTATTGCTGCTGCTGCTGCCGCCGCGTCCAAAAAGGTTGATGATCAAGGAGAAAACAGTTACCATAACTCTCACTACCAATCTCCACCAACCAATGAGTTTGTCGATGAAGAAGCGCTGTTCGGAATGCCAAATCTTTTACATGACATGGCTGAGGGAATGCTGTTGTCGCCCCCACGAATGAACTCGTCGCCGTCTCGACATGATTACTACTCGTGGAATTCAAGTGGAGATGGAAATCTTTGGAGCTACCACTAG 510 51.18 MASTSSKRHDHYKGIRCRGGKWVSEIREPRKTNRIWLGTYPTPEMAAAAYDVAALALKGCNAVLNFPNSVAFYPVPASTSPNDIRIAAAAAAASKKVDDQGENSYHNSHYQSPPTNEFVDEEALFGMPNLLHDMAEGMLLSPPRMNSSPSRHDYYSWNSSGDGNLWSYH* 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3131985 3134044 - CsaV3_3G003710.1 Csa03g00371 521276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00371 169 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
Csa03g00371 169 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700|GO:0006355
Csa03g00371 169 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Csa03g00371 169 Pfam AP2 domain 11 59 IPR001471 GO:0003700|GO:0006355
Csa03g00371 169 SMART rav1_2 11 73 IPR001471 GO:0003700|GO:0006355
Csa03g00371 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 168 - -
Csa03g00371 169 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
Csa03g00371 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 5 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00371 Csa-Chr3:3131985 Csa03g03387 Csa-Chr3:30556186 2.22E-48 dispersed
Csa03g00371 Csa-Chr3:3131985 Csa05g00324 Csa-Chr5:2025742 6.62E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31096 PF00847 AP2 1.80E-10 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00371 - - csv:101202953 348.206