Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00374 ATGTTGGCTGGGTGTTCTAGTTCAACATTGCTCTCACCAAGGAATCGATTGAGAAGCGAAGCACAGCCGCCATTTCCAGCTTGCCATTTGCAGTTGCCAACTTCGATGAGCACACAGAGATTGGATTTGCCCTGCAGCTTTTCCCGTTCCAAAGACGCCTCTGCCACAGCTCGATCCCCGTCAATCCGTCCAGTTGCGCTCTCTGTTGAGAAGCAGAACATTAGACTCCCACCGCTATCCGCCACCAGTCAGCAGATCAAGCAAGAGTTTTGGAAGGGGAAAGGTAAGAACTTGAAGAGAATTGCAGAACAAGTTGGGTTTGATGATGATGATGATTCTTCCATTAGCAGTGCCAAGAGGAAGAGAGAATGCAGAGACGACACCGCCGCAGACGGGTTAATTCTCAGCCAATTCGGAGGTGGGGGTGGGAGTTTCTGGTTTCATCAGCCTGATGTCGATGAAGAAGGATTCTGCTTTCTTCCTGGAAGTGAAGTCATTTTGTCACCGTCGCCATTTTTGTCGGAGATTGCTGATTTGGGAGAAGAAAATGACGGAGAGGAAAGCAGCCATGTGAAAGCTCAAGAAGCCTCCGGTTCGGGTTCGGGTTCGAGTTCATCATCAGAAAGTGAGAGATTTGCATTGAGAAGAAGAGTAACAACAGAGAATGTGTCAGCAGCAACAACAACAGTGCAAGAAATTGGGAATGGAAGCTCAAGAAATCCTTCATATCATCACCATCAAGCTTCTGATTTGGAAAATGAAAGGGAAGAAGAAGAAGGGTTTGAACTGATAAGACTTTTAATGGCATGTGTTGAAGCAATTGGATCAAAGAACATTGGTTTGATTACCCACTTGATTGATAAACTTGGAACTCAAGCTTCACCAAGAGGTTCATCACCAATTACACGTTTGATTGCATATTACACAGAAGCTCTAGCACTTAGAGTGAGCAGAGTTTGGCCACAGGTATTTCACATAACAACACCGAGGGAATACGATCGGATGGAGGATGATACGGGGACAGCGCTACGTCTGCTAAACGAGGTGAGTCCAATCCCAAAATTCATCCATTTCACAGCAAATGAGATGTTGCTAAGAGCATTTGAAGGGAAAGACAAGGTTCACATCATAGACTTTGACATAAAGCAAGGGCTGCAATGGCCAAGCTTGTTCCAAAGTCTGGCATCTAGAGCAAACCCACCAAGTCATGTTCGAATCACCGGGATCGGTGAGTCGAAGCAGGAATTGAACGAAACGGGAGATAGACTAGCAGGATTCGCCGAAGCATTGAGGCTACCATTTGAGTTCCATGCCGTGGTGGATCGGTTGGAGGATGTGAGGCTATGGATGCTTCATGTCAAGGAGCAAGAGAGTGTAGGTGTAAATTGCATACTCCAACTTCACAAGACTCTCTATGATGGCAATGGAGGAGCATTGAGAGACTTTTTGGGGCTTATCAGAAGCACAAACCCAAGCATTGTTGTCATGGCTGAACAAGAAGCCGAGCACAACGAACCGAGGTTAGAGACACGAGTTGCAGCTACACTGAAGTACTACGCCGCCGTATTTGATTCCCTTGACACAAGCCTTCCACCCGAAAGCTCGGCCAGGTTGAAAGTGGAGGAGATGTTTGGGAGGGAGATAAGGAACACGATAGCATGTGAAGGAAGGGAGAGGTATGAAAGACATGTTGGGTTCAAGAAATGGAAGAAGGATATGGAGCAGCAAGGAGGGATGCAATGCATCAGGATTCACGACGATCGAGAGCTTCTCCAGACTCAATTCCTCTTAAAAATGTATTCATCAGCAGCTCATGGATTCAATGTAACAAAGATTGAAGAAGAAGAAGAAGAAGAAGAAGGAACAGCTCAAGCAATTTGCCTAACTTGGGAAGATCAGCCACTTTACACTGTCTCAGCTTGGTCACCAGCAGAAGTTTCCGGGAGTTCATCTTCATTTAACCATCCAACTTCTTGA 1977 46.13 MLAGCSSSTLLSPRNRLRSEAQPPFPACHLQLPTSMSTQRLDLPCSFSRSKDASATARSPSIRPVALSVEKQNIRLPPLSATSQQIKQEFWKGKGKNLKRIAEQVGFDDDDDSSISSAKRKRECRDDTAADGLILSQFGGGGGSFWFHQPDVDEEGFCFLPGSEVILSPSPFLSEIADLGEENDGEESSHVKAQEASGSGSGSSSSSESERFALRRRVTTENVSAATTTVQEIGNGSSRNPSYHHHQASDLENEREEEEGFELIRLLMACVEAIGSKNIGLITHLIDKLGTQASPRGSSPITRLIAYYTEALALRVSRVWPQVFHITTPREYDRMEDDTGTALRLLNEVSPIPKFIHFTANEMLLRAFEGKDKVHIIDFDIKQGLQWPSLFQSLASRANPPSHVRITGIGESKQELNETGDRLAGFAEALRLPFEFHAVVDRLEDVRLWMLHVKEQESVGVNCILQLHKTLYDGNGGALRDFLGLIRSTNPSIVVMAEQEAEHNEPRLETRVAATLKYYAAVFDSLDTSLPPESSARLKVEEMFGREIRNTIACEGRERYERHVGFKKWKKDMEQQGGMQCIRIHDDRELLQTQFLLKMYSSAAHGFNVTKIEEEEEEEEGTAQAICLTWEDQPLYTVSAWSPAEVSGSSSSFNHPTS* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3164194 3167681 + CsaV3_3G003740.1 Csa03g00374 521279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00374 658 MobiDBLite consensus disorder prediction 181 255 - -
Csa03g00374 658 PANTHER SCARECROW-LIKE PROTEIN 28 6 646 IPR030027 -
Csa03g00374 658 MobiDBLite consensus disorder prediction 220 244 - -
Csa03g00374 658 Pfam GRAS domain family 263 641 IPR005202 -
Csa03g00374 658 MobiDBLite consensus disorder prediction 1 16 - -
Csa03g00374 658 MobiDBLite consensus disorder prediction 1 22 - -
Csa03g00374 658 ProSiteProfiles GRAS family profile. 254 642 IPR005202 -
Csa03g00374 658 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 646 IPR005202 -
Csa03g00374 658 MobiDBLite consensus disorder prediction 192 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00374 - - - csv:101209060 1248.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00374 Csa-Chr3:3164194 Csa02g02578 Csa-Chr2:22508174 3.35E-77 dispersed
Csa03g00374 Csa-Chr3:3164194 Csa03g00440 Csa-Chr3:3721517 2.43E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g365 . . . . . . . . . . . . . . . Cpe14g00825 . Bhi11g00394 . . . . . . . . . . . . . . . . . Lsi07g01415 . . Cme06g02702 . . . . . . . . . . . Cma06g00659 . Car06g00589 Car16g00908 Cpe08g00851 . . . . . . . . . . . . . . . . Csa03g00374 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004828 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 0 4 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31097 PF03514 GRAS 2.60E-120 CL0063 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00374 Csa_Chr03 FPKM 12.278409 17.926094 13.446446 12.21631 11.291448 15.190957 12.071739 18.823915 24.48686 27.532278