Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00375 ATGGCGATGCCGTCTCGTGAAGCAATTGATACTTTCATCAGCGTCACTGGTGCCTCTGAAGCCATTGCCGTTCAGAGCCTCGAGGCACATGGTTCTGATCTCAATGCTGCTGTGAACGCTTATTTCAATGAAGGAGATAGAAGTTCGTCTGTAAACGCACGTCAAGCCTCTGTTTCTGGTGAATATGATTTCATGGACATTGATGATCCAGTTGAAGTTGAACCCCAGGGTCCTCCTCGGTCTCTTCTATCTACAGCTAGAGAGATAATGAATCCCTTTTCAATACTTGATCAAAATCTGCGCCAGGGGTTCTTTGACCGCACTTCTGATTTTACAAGGTCTGCTCCACTTGTGACTCATCCAAGAGAGTCTAGGGAGATTCCCATAGAATTTAGAGATGGTAGTCGACCATCCAACCAATCACGCCATGAGCCGACAATTGAGGATGTCACTGGAGTTCCAGATGCCCATGGTCCAGAGGTTCATGGGACTGTCGTAGTTGATGATGGGGAAGATGAAGAACCTCCCGTTACTTCTATAGCACATGCACCAGATTTAGACCATCCGGCTGTTGCGAGTAACATATCTCGTGACAGAAATGCTGTATCTGGTGCCTTTGAAAGTGATGAGTTTCAGGACACAAATGATATTGAAGAAGAAATGATTCGTGCTGCAATTGAGGCTTCAAAAAAGGATGTTGGGCAAGCTTATCCGAGTGATCCCATAACTACGCACACTGATTTAAGCAACACTAGAACTCAAGAAAACCTTTCTCACTTGGATAATTTTGAATTTTCACCTGAAGCTTCATCTGTCAAGCCAGAGGAAGGTTTTCGTCGGCGAGGGGAGAATATTGGAGGATCTAAGGTAGAAGCTTCTAAGTCAACTGAGGTGGATGTGGAGCTGAGAAAAGTCAGAGGACTGAATGGAAGGATGGAAACAGGAAGTACGTCTGCTCAAGATGAAGTTGAAGACCTAGAGGAAGATAATTTAGTTAGGCATCGATCTAAACGCAAGTCCACTGGTTATGTAGAGCCTGCAAAGGGGGATGAAGTAGATGTAAACCTTGCATCTAGTCCCAAGCATTCTGATACTAGTAATAATCCACAGCGCAATGGGAATATCTTTCCTTCTGATGAGTGGGGTGGAATTTCTTCAGAGGAGCATGATGAAGCAGTCATGCTGGAGGCTGCCATGTTTGGTGGAGCTTCTGAAGGAAGTTCGTTCCATTTTCCATCTGCACCACATGAATTCATGAGAAATCAAGGTTCATATATTCAGCCAGCCCCTCGCCCTCCTTCTCCTTCTTTAGTAGCTCAGCGTTTGATAAGGGAACAGCAGGATGATGAGTATCTTGCAGCCTTGCAAGCTGACAGAGAAAAAGAATTGAAAGCCTTGGAAGAAGCTGCAGCTGTTCGTGAACAAGAAAGACAAAGAGAGGAAGAATCCCGTCAGAAATTGGATGCTGAGAAGGAACTTGAACGACGCTTGGCAGAAATAGAAGCTTCTCTACCTACTGAACCAAGAACAGATGACGAGAATGCTGTGACACTATTAGTGCGCATGCCAGATGGCAGTCGCCGCGGTCGTCGATTTCTCAAAACTGATAAGCTACAGCGGCTCTTGGACTTCATTGATATTGGTAGAGTTGTCAAGCCCGGCTCCTACAGATTGGTGAGGCCATATCCTCGTAAAGCTTTTGGAGATGGAGAGGGTTCATTAACATTAAATGAACTTGGACTAAACAGCAAACAAGAAGCATTGTATCTGGAGTTGATTTAG 1782 45.06 MAMPSREAIDTFISVTGASEAIAVQSLEAHGSDLNAAVNAYFNEGDRSSSVNARQASVSGEYDFMDIDDPVEVEPQGPPRSLLSTAREIMNPFSILDQNLRQGFFDRTSDFTRSAPLVTHPRESREIPIEFRDGSRPSNQSRHEPTIEDVTGVPDAHGPEVHGTVVVDDGEDEEPPVTSIAHAPDLDHPAVASNISRDRNAVSGAFESDEFQDTNDIEEEMIRAAIEASKKDVGQAYPSDPITTHTDLSNTRTQENLSHLDNFEFSPEASSVKPEEGFRRRGENIGGSKVEASKSTEVDVELRKVRGLNGRMETGSTSAQDEVEDLEEDNLVRHRSKRKSTGYVEPAKGDEVDVNLASSPKHSDTSNNPQRNGNIFPSDEWGGISSEEHDEAVMLEAAMFGGASEGSSFHFPSAPHEFMRNQGSYIQPAPRPPSPSLVAQRLIREQQDDEYLAALQADREKELKALEEAAAVREQERQREEESRQKLDAEKELERRLAEIEASLPTEPRTDDENAVTLLVRMPDGSRRGRRFLKTDKLQRLLDFIDIGRVVKPGSYRLVRPYPRKAFGDGEGSLTLNELGLNSKQEALYLELI* 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3168304 3174708 - CsaV3_3G003750.1 Csa03g00375 521280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00375 593 MobiDBLite consensus disorder prediction 309 384 - -
Csa03g00375 593 Pfam UBA-like domain 6 47 - -
Csa03g00375 593 Gene3D - 512 592 - -
Csa03g00375 593 Gene3D - 5 45 - -
Csa03g00375 593 MobiDBLite consensus disorder prediction 327 346 - -
Csa03g00375 593 CDD UBX 517 591 - -
Csa03g00375 593 PANTHER FAS-ASSOCIATED PROTEIN 1 593 - -
Csa03g00375 593 PANTHER OS09G0525600 PROTEIN 1 593 - -
Csa03g00375 593 MobiDBLite consensus disorder prediction 259 297 - -
Csa03g00375 593 MobiDBLite consensus disorder prediction 131 160 - -
Csa03g00375 593 Coils Coil 452 499 - -
Csa03g00375 593 MobiDBLite consensus disorder prediction 358 375 - -
Csa03g00375 593 MobiDBLite consensus disorder prediction 273 287 - -
Csa03g00375 593 CDD UBA_Ubx1_like 6 42 - -
Csa03g00375 593 Pfam UBX domain 512 591 IPR001012 GO:0005515
Csa03g00375 593 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515
Csa03g00375 593 SUPERFAMILY Ubiquitin-like 474 583 IPR029071 -
Csa03g00375 593 SMART ubx_3 508 592 IPR001012 GO:0005515
Csa03g00375 593 ProSiteProfiles UBX domain profile. 511 589 IPR001012 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00375 - - - csv:101208817 1125.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00375 Csa-Chr3:3168304 Csa03g00923 Csa-Chr3:7592157 7.52E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g317 Blo02g01111 Blo03g00217 Bda06g00113 Bda08g00368 Bpe05g00647 Bpe07g00106 . . Cmo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0782 Cone9ag0786 . . . Cme06g02703 . . Bda07g00480 . . . . Bma12g00073 . . . Cma06g01013 . Car06g00850 . Cpe08g00597 . . . . . . . . . . . . . . . . Csa03g00375 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00375 Csa_Chr03 FPKM 23.20093 24.016134 29.223145 28.329361 30.034941 30.478746 33.390556 36.275372 35.38036 35.470474