Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00384 | ATGGGGAGAACTGATGATAACATTGCTATTATTGGGGATTGGGTACCTCCAAGTCCTAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAAACCTTCAATGGACACTACTACCATCAGTGATCATAAAACCGAAGAACTCTTTCTCAGGCCTCGAGAACAAACGGTGTCCGAAAACGCCTTTGCAAGAGGCGGGATCCCGGGTGTCAATTCTGGGGACCGAGGAATGGAGTTCAGTACGTTCTCGGAGCAAAAATTTCGTGGAGGACTCGTGGAAAGGATTGCAGCTAGAGCTGGATTTAATGCTCCGAGATTGAATACAGAGAGCATTAGATCAACAGATCATTCTTTGAATTCAGAAGTAAAGTCTCCTTATTTGACAATACCACCTGGTCTCAGTCCCACTACATTGCTAGATTCTCCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGGAAGTTTCCATTTTTACCAAATGTATGTATTTCTCGGAGCTCAACGATGATGTCAGAGGCCAACAACAAAGGCAACAACAATCTGTTCGACGATAACAATACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTTTTCTCAATGCAGCAAGCAAAACAGCTTCTGCTACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATCGTGTTGAACCATCTCTGTCTTTGCCCCAAAATCGAATTGGTCACCATCCTCAAGTGGGACTCTCTACAACGTACGTCGAGAAGGACAATGGGGGTAAGGCTGTGTCAGAAGAGCAAAGACCCTTTGATTCTCTTGGTGGTGGTAGTGGTGGTAGTGGTGAACATTCTTCACCTCTCGACGAGCAACTGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGCTTGCGGTACTCCCTCGGAGGATGGGTATAATTGGAGAAAATACGGACAAAAACAGGTTAAAGGAAGCGAGTATCCTCGGAGTTATTACAAGTGCACACATCCTAACTGTCAGGTCAAGAAGAAAGTCGAGCGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAACACATAACCACCCAAAGCCTTCACCAAACCGACGAGGAGCAATTGGATCTTCTGATTCCCATATGAATATGCAACTAGACATCCCTGCACAAGCAGGCCAACAAAGTGCTGATGTTCCTCTTTGGGAAGATTCACAAAAAAGGGTTCCAAGTGGAGCTCCTGATTGGATGCATGAGAACCTTGAGGTGACTTCTTCAGCATCTTTGGGTCCTGAATACGGCAATCAGCCTAACTCTTTACAAGCTCAAAATGGGAGTCATATTGAAACAGTTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACGCATGGCAGTATAACATTGGGATATGAAGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGATGCCTATGTAACAGAGATGAGTGGGGCCACTAGAGCTATCCGTGAGCCTAGGGTTGTTGTCCAGACTACCAGTGAAGTCGATATTCTGGATGACGGTTATCGTTGGCGCAAATACGGACAGAAGGTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGCACAAATCCTGGCTGTACAGTGAGGAAGCATGTCGAGCGGGCGTCACATGACCTGAAGTCCGTAATAACCACATATGAAGGAAAACACAATCATGATGTTCCTGCAGCTCGAAACAGTAGCCATATCAGTTCGGGTACATCCAGTCCTGTAACTGGTCAAAACTCGACTGCGGCAATTCAAACTCATGTTCACAGGCCAGGGCCATCCCAGCCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCTTTTGGTTTTGCTGGAAGACAACAAATGGGGCCTGCCCATGGCTTTGCTTTTGGAATGAACCAACCTGGATTGGGAAATCTGACCATGGCAGCAGTTGGGCAACCCAAGCTTCCCGTTTTGCCAATGCATGCTTACTTAGGACAAGCACACCATGTTAATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTTTCCAGTGGTTCAACTGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA | 2244 | 45.45 | MGRTDDNIAIIGDWVPPSPSPRTFFSAMQMLGEDIGSKPSMDTTTISDHKTEELFLRPREQTVSENAFARGGIPGVNSGDRGMEFSTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVCISRSSTMMSEANNKGNNNLFDDNNTSFAFRPSVESGSSFFLNAASKTASATILPQSCPRIEVPVPRSENSFQSHRVEPSLSLPQNRIGHHPQVGLSTTYVEKDNGGKAVSEEQRPFDSLGGGSGGSGEHSSPLDEQLDEGEQRGSGDSMAGGACGTPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHPKPSPNRRGAIGSSDSHMNMQLDIPAQAGQQSADVPLWEDSQKRVPSGAPDWMHENLEVTSSASLGPEYGNQPNSLQAQNGSHIETVEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSTAAIQTHVHRPGPSQPQNTIPRFERPAFGFAGRQQMGPAHGFAFGMNQPGLGNLTMAAVGQPKLPVLPMHAYLGQAHHVNEMGFLLPKGEPNVEPTSDLGFSSGSTVYQQIMSRLPLGPEM* | 748 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3226389 | 3233715 | - | CsaV3_3G003840.1 | Csa03g00384 | 521289 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00384 | 747 | Gene3D | WRKY domain | 532 | 598 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00384 | 747 | PANTHER | WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 | 107 | 652 | - | - | |
Csa03g00384 | 747 | ProSiteProfiles | WRKY domain profile. | 540 | 605 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00384 | 747 | MobiDBLite | consensus disorder prediction | 238 | 252 | - | - | |
Csa03g00384 | 747 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 107 | 652 | IPR044810 | GO:0003700 | |
Csa03g00384 | 747 | MobiDBLite | consensus disorder prediction | 599 | 624 | - | - | |
Csa03g00384 | 747 | ProSiteProfiles | WRKY domain profile. | 331 | 389 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00384 | 747 | Pfam | WRKY DNA -binding domain | 546 | 602 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00384 | 747 | Pfam | WRKY DNA -binding domain | 331 | 387 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00384 | 747 | MobiDBLite | consensus disorder prediction | 480 | 513 | - | - | |
Csa03g00384 | 747 | MobiDBLite | consensus disorder prediction | 607 | 624 | - | - | |
Csa03g00384 | 747 | SUPERFAMILY | WRKY DNA-binding domain | 537 | 605 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00384 | 747 | SUPERFAMILY | WRKY DNA-binding domain | 329 | 389 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00384 | 747 | MobiDBLite | consensus disorder prediction | 238 | 337 | - | - | |
Csa03g00384 | 747 | SMART | WRKY_cls | 545 | 604 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00384 | 747 | SMART | WRKY_cls | 330 | 388 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00384 | 747 | Gene3D | WRKY domain | 325 | 390 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g03336 | Csa-Chr1:29902748 | Csa03g00384 | Csa-Chr3:3226389 | 8.81E-07 | dispersed | |
Csa03g00384 | Csa-Chr3:3226389 | Csa03g00441 | Csa-Chr3:3723776 | 1.22E-98 | dispersed | |
Csa03g00384 | Csa-Chr3:3226389 | Csa05g03014 | Csa-Chr5:30396040 | 2.18E-78 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31101 | PF03106 | WRKY | 3.10E-24 | CL0274 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00384 | K18835 | - | csv:101207853 | 1452.19 |