Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00384 ATGGGGAGAACTGATGATAACATTGCTATTATTGGGGATTGGGTACCTCCAAGTCCTAGCCCAAGAACCTTTTTCTCAGCAATGCAAATGCTAGGGGAGGATATTGGTTCTAAACCTTCAATGGACACTACTACCATCAGTGATCATAAAACCGAAGAACTCTTTCTCAGGCCTCGAGAACAAACGGTGTCCGAAAACGCCTTTGCAAGAGGCGGGATCCCGGGTGTCAATTCTGGGGACCGAGGAATGGAGTTCAGTACGTTCTCGGAGCAAAAATTTCGTGGAGGACTCGTGGAAAGGATTGCAGCTAGAGCTGGATTTAATGCTCCGAGATTGAATACAGAGAGCATTAGATCAACAGATCATTCTTTGAATTCAGAAGTAAAGTCTCCTTATTTGACAATACCACCTGGTCTCAGTCCCACTACATTGCTAGATTCTCCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGGAAGTTTCCATTTTTACCAAATGTATGTATTTCTCGGAGCTCAACGATGATGTCAGAGGCCAACAACAAAGGCAACAACAATCTGTTCGACGATAACAATACATCATTTGCTTTCAGACCCAGTGTGGAATCTGGATCCTCCTTTTTTCTCAATGCAGCAAGCAAAACAGCTTCTGCTACTATTCTTCCACAATCTTGTCCAAGAATTGAGGTTCCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATCGTGTTGAACCATCTCTGTCTTTGCCCCAAAATCGAATTGGTCACCATCCTCAAGTGGGACTCTCTACAACGTACGTCGAGAAGGACAATGGGGGTAAGGCTGTGTCAGAAGAGCAAAGACCCTTTGATTCTCTTGGTGGTGGTAGTGGTGGTAGTGGTGAACATTCTTCACCTCTCGACGAGCAACTGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGCTTGCGGTACTCCCTCGGAGGATGGGTATAATTGGAGAAAATACGGACAAAAACAGGTTAAAGGAAGCGAGTATCCTCGGAGTTATTACAAGTGCACACATCCTAACTGTCAGGTCAAGAAGAAAGTCGAGCGATCTCACGAGGGCCATATAACAGAGATCATCTATAAAGGAACACATAACCACCCAAAGCCTTCACCAAACCGACGAGGAGCAATTGGATCTTCTGATTCCCATATGAATATGCAACTAGACATCCCTGCACAAGCAGGCCAACAAAGTGCTGATGTTCCTCTTTGGGAAGATTCACAAAAAAGGGTTCCAAGTGGAGCTCCTGATTGGATGCATGAGAACCTTGAGGTGACTTCTTCAGCATCTTTGGGTCCTGAATACGGCAATCAGCCTAACTCTTTACAAGCTCAAAATGGGAGTCATATTGAAACAGTTGAGGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGAACGCATGGCAGTATAACATTGGGATATGAAGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGATGCCTATGTAACAGAGATGAGTGGGGCCACTAGAGCTATCCGTGAGCCTAGGGTTGTTGTCCAGACTACCAGTGAAGTCGATATTCTGGATGACGGTTATCGTTGGCGCAAATACGGACAGAAGGTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGCACAAATCCTGGCTGTACAGTGAGGAAGCATGTCGAGCGGGCGTCACATGACCTGAAGTCCGTAATAACCACATATGAAGGAAAACACAATCATGATGTTCCTGCAGCTCGAAACAGTAGCCATATCAGTTCGGGTACATCCAGTCCTGTAACTGGTCAAAACTCGACTGCGGCAATTCAAACTCATGTTCACAGGCCAGGGCCATCCCAGCCTCAAAACACCATTCCAAGATTTGAAAGGCCAGCTTTTGGTTTTGCTGGAAGACAACAAATGGGGCCTGCCCATGGCTTTGCTTTTGGAATGAACCAACCTGGATTGGGAAATCTGACCATGGCAGCAGTTGGGCAACCCAAGCTTCCCGTTTTGCCAATGCATGCTTACTTAGGACAAGCACACCATGTTAATGAAATGGGTTTCTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTTTCCAGTGGTTCAACTGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2244 45.45 MGRTDDNIAIIGDWVPPSPSPRTFFSAMQMLGEDIGSKPSMDTTTISDHKTEELFLRPREQTVSENAFARGGIPGVNSGDRGMEFSTFSEQKFRGGLVERIAARAGFNAPRLNTESIRSTDHSLNSEVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVCISRSSTMMSEANNKGNNNLFDDNNTSFAFRPSVESGSSFFLNAASKTASATILPQSCPRIEVPVPRSENSFQSHRVEPSLSLPQNRIGHHPQVGLSTTYVEKDNGGKAVSEEQRPFDSLGGGSGGSGEHSSPLDEQLDEGEQRGSGDSMAGGACGTPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGTHNHPKPSPNRRGAIGSSDSHMNMQLDIPAQAGQQSADVPLWEDSQKRVPSGAPDWMHENLEVTSSASLGPEYGNQPNSLQAQNGSHIETVEAIDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPVTGQNSTAAIQTHVHRPGPSQPQNTIPRFERPAFGFAGRQQMGPAHGFAFGMNQPGLGNLTMAAVGQPKLPVLPMHAYLGQAHHVNEMGFLLPKGEPNVEPTSDLGFSSGSTVYQQIMSRLPLGPEM* 748
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 3226389 3233715 - CsaV3_3G003840.1 Csa03g00384 521289
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00384 747 Gene3D WRKY domain 532 598 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g00384 747 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 107 652 - -
Csa03g00384 747 ProSiteProfiles WRKY domain profile. 540 605 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00384 747 MobiDBLite consensus disorder prediction 238 252 - -
Csa03g00384 747 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 107 652 IPR044810 GO:0003700
Csa03g00384 747 MobiDBLite consensus disorder prediction 599 624 - -
Csa03g00384 747 ProSiteProfiles WRKY domain profile. 331 389 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00384 747 Pfam WRKY DNA -binding domain 546 602 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00384 747 Pfam WRKY DNA -binding domain 331 387 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00384 747 MobiDBLite consensus disorder prediction 480 513 - -
Csa03g00384 747 MobiDBLite consensus disorder prediction 607 624 - -
Csa03g00384 747 SUPERFAMILY WRKY DNA-binding domain 537 605 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g00384 747 SUPERFAMILY WRKY DNA-binding domain 329 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g00384 747 MobiDBLite consensus disorder prediction 238 337 - -
Csa03g00384 747 SMART WRKY_cls 545 604 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00384 747 SMART WRKY_cls 330 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00384 747 Gene3D WRKY domain 325 390 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03336 Csa-Chr1:29902748 Csa03g00384 Csa-Chr3:3226389 8.81E-07 dispersed
Csa03g00384 Csa-Chr3:3226389 Csa03g00441 Csa-Chr3:3723776 1.22E-98 dispersed
Csa03g00384 Csa-Chr3:3226389 Csa05g03014 Csa-Chr5:30396040 2.18E-78 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31101 PF03106 WRKY 3.10E-24 CL0274 Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00384 K18835 - csv:101207853 1452.19