Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00390 ATGTTTTGTCTATTGCTCAGCATCGCAACGCTTCGTGTAGGAAGCAAAGTGCCATCGTGCACATCACGTTTGAGGTGTGACATAGCAGTGCCATACAATGTTCTACGTTTGATAGCAGCTCAAATGTTGGTGCACTACTCTTCCAGTTCATGGTTCATTCCACTTCTGTGCAGATTTGAGACATCAACTTCTTCTCGTGCCATTGAGTCCTACATTGTTTATTTGGGAGCACCCTCGGTCGGATCAAACCCTACAAACTATGATATCGAAGTCGCAACCGAGTCACAATATGATTTATTAGGATCAGTTGTGGGAAGCAAATTGGCAGCCAAGGATGCAATTAAGTATTCTTACAATAAATACATTAATGGTTTTGCTGCTACTCTTGATGAGAAACAAGCCAAGGATCTTGCAAAGAATCCAAAGGTGGTGTCGGTTTTTGAAAACAAGGAAAGAAAATTGCATACAACACGATCGTGGCATTTTCTTGGAGTGGAAAGTGATGAAGGAATTCCTTCAAACTCCATTTGGAATGCTGGAAGGTTTGGTGAAGATACAATTATAGGCAACCTTGACACAGGTGTTTGGCCAGAGTCGAAGAGCTTCAACGATGCAGGCTATGGCCCTGTTCCTTCAAGGTGGAGGGGAGCTTGTGAAGGTGGCGCCAACTTTCGTTGCAATAGGAAGTTGATTGGAGCAAGATATTTCAACAAAGGATTTGCAATGGCAAGCGGTCCTCTCAACATTAGCTTCAACACAGCAAGAGATAAACAAGGCCATGGTTCACACACTTTATCCACAGCCGGAGGCAACTTTGTCCCCGGAGCCAATGTCTTTGGCTATGGCAATGGCACTGCAAAAGGAGGTTCCCCGAAAGCTCGTGTTGCTGCCTACAAGGTTTGCTGGCCTGCGACTTCTGGTGGTGGCTGTTACGATGCTGATATCTTAGCCGGTTTTGAAGCCGCCATTAGTGATGGTGTCGATGTTCTCTCAGTCTCTCTTGGTTCTAAACCTGAAGAGTTTGCTTATGATTCCATGTCCATAGGGGCATTCCATGCTGTTCAACAAGGAATTGTCGTGGTTTGCTCTGCTGGAAATGATGGTCCGGGTCCTGGAACTGTATCCAATATATCTCCTTGGATGTTCACTGTCGCAGCTAGCTCCATCGATCGAGATTTCACAAGTTATGCTTCCCTTGGAAACAAGAAGCATTATAAGTCATTTGCTTTAGTTAACCTCAAACTTTACACATTCCAGGGTTCAAGTATTTCATCGAGTGCATTGGCTGGTGGTAAATTCTACCCTTTGATAAATGCTGTAGATGCAAAAGCTGCCAATGCGTCCGAAATCCTTGCGCAACTTTGCCACAAGGGATCGCTTGATCCAACAAAGGCAAAAGGGAAGATTATAGTTTGTCTTCGAGGAGAAAATGCAAGAGTTGAGAAAGGTTTTGTTGTTCTTCAAGCTGGTGGTGTTGGTATGATTTTAGTGAATGGCAAGAACGGTGGATCAGGCACTACGGCTGATGCCCATATACTTCCTGCCACTCATCTTAGCTACACCGATGGACTTGCTGTTGCTCAATATATTAACTCCACCAAAACACCCGTTGCTCACATAACACCTGTACAGACTCAGCTAGGAATTAAACCGTCACCTGTCATGGCTGACTTCTCATCAAGAGGCCCTAATCCCATCACTGAGGCCATGCTCAAGCCTGATATAACAGGACCGGGAATGAGTATACTTGCATCGGTCACAACAGATGTAACTGCCACGACATTTCCATTCGATACGCGTCGGGTGCCCTTCAACGTTGAATCGGGCACTTCCATGTCTTGCCCACACATCTCAGGTGTTGTTGGTCTTCTCAAGACTCTTTATCCCACATGGAGTCCAGCAGCTATCAAATCTGCCATCATGACTACAGCCAAAACAAGAGACAATACGATGCGTACAATATCAGACAACGTCAAGCCCAAGGCAACCCCATTTGATTATGGTGCAGGACATGTCCATCCCAATAGTGCAATGGACCCCGGCCTCGTTTACGACACAACCATCGACGATTACTTGAACTTCTTATGTGCACGTGGCTACAACTCCCTCACTTTCAAGAATTTCTATAACAAACCATTTGTCTGCGCAAAATCGTTCACATTGACCGATCTCAACTACCCATCAATCTCGATCCCAAAGTTGCAATTTGGGGCTCCAGTAACGGTCAATAGAAGAGTTAAGAATGTGGGAACCCCAGGAACATACGTAGCACGTGTGAATGCGTCCTCAAAGATCTTAGTTACGGTCGAGCCGAGTACGTTGCAGTTTAATAGTGTGGGTGAAGAGAAGGCTTTCAAGGTTGTATTTGAATACAAAGGAAATGAACAAGATAAAGGCTATGTGTTTGGGACATTGATATGGTCAGATGGGAAGCATAATGTTAGAAGTCCTATTGTAGTGAATTTGGGATGA 2472 44.86 MFCLLLSIATLRVGSKVPSCTSRLRCDIAVPYNVLRLIAAQMLVHYSSSSWFIPLLCRFETSTSSRAIESYIVYLGAPSVGSNPTNYDIEVATESQYDLLGSVVGSKLAAKDAIKYSYNKYINGFAATLDEKQAKDLAKNPKVVSVFENKERKLHTTRSWHFLGVESDEGIPSNSIWNAGRFGEDTIIGNLDTGVWPESKSFNDAGYGPVPSRWRGACEGGANFRCNRKLIGARYFNKGFAMASGPLNISFNTARDKQGHGSHTLSTAGGNFVPGANVFGYGNGTAKGGSPKARVAAYKVCWPATSGGGCYDADILAGFEAAISDGVDVLSVSLGSKPEEFAYDSMSIGAFHAVQQGIVVVCSAGNDGPGPGTVSNISPWMFTVAASSIDRDFTSYASLGNKKHYKSFALVNLKLYTFQGSSISSSALAGGKFYPLINAVDAKAANASEILAQLCHKGSLDPTKAKGKIIVCLRGENARVEKGFVVLQAGGVGMILVNGKNGGSGTTADAHILPATHLSYTDGLAVAQYINSTKTPVAHITPVQTQLGIKPSPVMADFSSRGPNPITEAMLKPDITGPGMSILASVTTDVTATTFPFDTRRVPFNVESGTSMSCPHISGVVGLLKTLYPTWSPAAIKSAIMTTAKTRDNTMRTISDNVKPKATPFDYGAGHVHPNSAMDPGLVYDTTIDDYLNFLCARGYNSLTFKNFYNKPFVCAKSFTLTDLNYPSISIPKLQFGAPVTVNRRVKNVGTPGTYVARVNASSKILVTVEPSTLQFNSVGEEKAFKVVFEYKGNEQDKGYVFGTLIWSDGKHNVRSPIVVNLG* 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3265436 3273849 + CsaV3_3G003900.1 Csa03g00390 521295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00390 823 Pfam Subtilase family 183 670 IPR000209 GO:0006508|GO:0008236
Csa03g00390 823 SUPERFAMILY Protease propeptides/inhibitors 104 152 - -
Csa03g00390 823 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 69 823 - -
Csa03g00390 823 Pfam Peptidase inhibitor I9 70 155 IPR010259 -
Csa03g00390 823 ProSiteProfiles Serine proteases, subtilase domain profile. 159 678 - -
Csa03g00390 823 Gene3D Peptidase S8/S53 domain 185 691 IPR036852 GO:0004252|GO:0006508
Csa03g00390 823 SUPERFAMILY Subtilisin-like 154 682 IPR036852 GO:0004252|GO:0006508
Csa03g00390 823 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 69 823 IPR045051 -
Csa03g00390 823 Gene3D - 695 822 - -
Csa03g00390 823 SUPERFAMILY PA domain 462 548 IPR046450 -
Csa03g00390 823 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 57 155 IPR037045 -
Csa03g00390 823 Gene3D - 390 547 - -
Csa03g00390 823 PRINTS Subtilisin serine protease family (S8) signature 183 202 IPR015500 -
Csa03g00390 823 PRINTS Subtilisin serine protease family (S8) signature 256 269 IPR015500 -
Csa03g00390 823 PRINTS Subtilisin serine protease family (S8) signature 608 624 IPR015500 -
Csa03g00390 823 ProSitePatterns Serine proteases, subtilase family, serine active site. 609 619 IPR023828 -
Csa03g00390 823 Pfam Fibronectin type-III domain 723 820 IPR041469 -
Csa03g00390 823 CDD Peptidases_S8_3 153 644 IPR034197 -
Csa03g00390 823 Pfam PA domain 448 525 IPR003137 -
Csa03g00390 823 CDD PA_subtilisin_like 396 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00390 Csa-Chr3:3265436 Csa03g00392 Csa-Chr3:3280005 0 dispersed
Csa06g02198 Csa-Chr6:19835261 Csa03g00390 Csa-Chr3:3265436 0 dispersed
Csa03g00390 Csa-Chr3:3265436 Csa03g00391 Csa-Chr3:3274637 2.86E-76 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00390 - - csv:101212014 1552.34