Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00390 ATGTTTTGTCTATTGCTCAGCATCGCAACGCTTCGTGTAGGAAGCAAAGTGCCATCGTGCACATCACGTTTGAGGTGTGACATAGCAGTGCCATACAATGTTCTACGTTTGATAGCAGCTCAAATGTTGGTGCACTACTCTTCCAGTTCATGGTTCATTCCACTTCTGTGCAGATTTGAGACATCAACTTCTTCTCGTGCCATTGAGTCCTACATTGTTTATTTGGGAGCACCCTCGGTCGGATCAAACCCTACAAACTATGATATCGAAGTCGCAACCGAGTCACAATATGATTTATTAGGATCAGTTGTGGGAAGCAAATTGGCAGCCAAGGATGCAATTAAGTATTCTTACAATAAATACATTAATGGTTTTGCTGCTACTCTTGATGAGAAACAAGCCAAGGATCTTGCAAAGAATCCAAAGGTGGTGTCGGTTTTTGAAAACAAGGAAAGAAAATTGCATACAACACGATCGTGGCATTTTCTTGGAGTGGAAAGTGATGAAGGAATTCCTTCAAACTCCATTTGGAATGCTGGAAGGTTTGGTGAAGATACAATTATAGGCAACCTTGACACAGGTGTTTGGCCAGAGTCGAAGAGCTTCAACGATGCAGGCTATGGCCCTGTTCCTTCAAGGTGGAGGGGAGCTTGTGAAGGTGGCGCCAACTTTCGTTGCAATAGGAAGTTGATTGGAGCAAGATATTTCAACAAAGGATTTGCAATGGCAAGCGGTCCTCTCAACATTAGCTTCAACACAGCAAGAGATAAACAAGGCCATGGTTCACACACTTTATCCACAGCCGGAGGCAACTTTGTCCCCGGAGCCAATGTCTTTGGCTATGGCAATGGCACTGCAAAAGGAGGTTCCCCGAAAGCTCGTGTTGCTGCCTACAAGGTTTGCTGGCCTGCGACTTCTGGTGGTGGCTGTTACGATGCTGATATCTTAGCCGGTTTTGAAGCCGCCATTAGTGATGGTGTCGATGTTCTCTCAGTCTCTCTTGGTTCTAAACCTGAAGAGTTTGCTTATGATTCCATGTCCATAGGGGCATTCCATGCTGTTCAACAAGGAATTGTCGTGGTTTGCTCTGCTGGAAATGATGGTCCGGGTCCTGGAACTGTATCCAATATATCTCCTTGGATGTTCACTGTCGCAGCTAGCTCCATCGATCGAGATTTCACAAGTTATGCTTCCCTTGGAAACAAGAAGCATTATAAGTCATTTGCTTTAGTTAACCTCAAACTTTACACATTCCAGGGTTCAAGTATTTCATCGAGTGCATTGGCTGGTGGTAAATTCTACCCTTTGATAAATGCTGTAGATGCAAAAGCTGCCAATGCGTCCGAAATCCTTGCGCAACTTTGCCACAAGGGATCGCTTGATCCAACAAAGGCAAAAGGGAAGATTATAGTTTGTCTTCGAGGAGAAAATGCAAGAGTTGAGAAAGGTTTTGTTGTTCTTCAAGCTGGTGGTGTTGGTATGATTTTAGTGAATGGCAAGAACGGTGGATCAGGCACTACGGCTGATGCCCATATACTTCCTGCCACTCATCTTAGCTACACCGATGGACTTGCTGTTGCTCAATATATTAACTCCACCAAAACACCCGTTGCTCACATAACACCTGTACAGACTCAGCTAGGAATTAAACCGTCACCTGTCATGGCTGACTTCTCATCAAGAGGCCCTAATCCCATCACTGAGGCCATGCTCAAGCCTGATATAACAGGACCGGGAATGAGTATACTTGCATCGGTCACAACAGATGTAACTGCCACGACATTTCCATTCGATACGCGTCGGGTGCCCTTCAACGTTGAATCGGGCACTTCCATGTCTTGCCCACACATCTCAGGTGTTGTTGGTCTTCTCAAGACTCTTTATCCCACATGGAGTCCAGCAGCTATCAAATCTGCCATCATGACTACAGCCAAAACAAGAGACAATACGATGCGTACAATATCAGACAACGTCAAGCCCAAGGCAACCCCATTTGATTATGGTGCAGGACATGTCCATCCCAATAGTGCAATGGACCCCGGCCTCGTTTACGACACAACCATCGACGATTACTTGAACTTCTTATGTGCACGTGGCTACAACTCCCTCACTTTCAAGAATTTCTATAACAAACCATTTGTCTGCGCAAAATCGTTCACATTGACCGATCTCAACTACCCATCAATCTCGATCCCAAAGTTGCAATTTGGGGCTCCAGTAACGGTCAATAGAAGAGTTAAGAATGTGGGAACCCCAGGAACATACGTAGCACGTGTGAATGCGTCCTCAAAGATCTTAGTTACGGTCGAGCCGAGTACGTTGCAGTTTAATAGTGTGGGTGAAGAGAAGGCTTTCAAGGTTGTATTTGAATACAAAGGAAATGAACAAGATAAAGGCTATGTGTTTGGGACATTGATATGGTCAGATGGGAAGCATAATGTTAGAAGTCCTATTGTAGTGAATTTGGGATGA 2472 44.86 MFCLLLSIATLRVGSKVPSCTSRLRCDIAVPYNVLRLIAAQMLVHYSSSSWFIPLLCRFETSTSSRAIESYIVYLGAPSVGSNPTNYDIEVATESQYDLLGSVVGSKLAAKDAIKYSYNKYINGFAATLDEKQAKDLAKNPKVVSVFENKERKLHTTRSWHFLGVESDEGIPSNSIWNAGRFGEDTIIGNLDTGVWPESKSFNDAGYGPVPSRWRGACEGGANFRCNRKLIGARYFNKGFAMASGPLNISFNTARDKQGHGSHTLSTAGGNFVPGANVFGYGNGTAKGGSPKARVAAYKVCWPATSGGGCYDADILAGFEAAISDGVDVLSVSLGSKPEEFAYDSMSIGAFHAVQQGIVVVCSAGNDGPGPGTVSNISPWMFTVAASSIDRDFTSYASLGNKKHYKSFALVNLKLYTFQGSSISSSALAGGKFYPLINAVDAKAANASEILAQLCHKGSLDPTKAKGKIIVCLRGENARVEKGFVVLQAGGVGMILVNGKNGGSGTTADAHILPATHLSYTDGLAVAQYINSTKTPVAHITPVQTQLGIKPSPVMADFSSRGPNPITEAMLKPDITGPGMSILASVTTDVTATTFPFDTRRVPFNVESGTSMSCPHISGVVGLLKTLYPTWSPAAIKSAIMTTAKTRDNTMRTISDNVKPKATPFDYGAGHVHPNSAMDPGLVYDTTIDDYLNFLCARGYNSLTFKNFYNKPFVCAKSFTLTDLNYPSISIPKLQFGAPVTVNRRVKNVGTPGTYVARVNASSKILVTVEPSTLQFNSVGEEKAFKVVFEYKGNEQDKGYVFGTLIWSDGKHNVRSPIVVNLG* 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3265436 3273849 + CsaV3_3G003900.1 Csa03g00390 521295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00390 823 Pfam Subtilase family 183 670 IPR000209 GO:0006508|GO:0008236
Csa03g00390 823 SUPERFAMILY Protease propeptides/inhibitors 104 152 - -
Csa03g00390 823 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 69 823 - -
Csa03g00390 823 Pfam Peptidase inhibitor I9 70 155 IPR010259 -
Csa03g00390 823 ProSiteProfiles Serine proteases, subtilase domain profile. 159 678 - -
Csa03g00390 823 Gene3D Peptidase S8/S53 domain 185 691 IPR036852 GO:0004252|GO:0006508
Csa03g00390 823 SUPERFAMILY Subtilisin-like 154 682 IPR036852 GO:0004252|GO:0006508
Csa03g00390 823 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 69 823 IPR045051 -
Csa03g00390 823 Gene3D - 695 822 - -
Csa03g00390 823 SUPERFAMILY PA domain 462 548 IPR046450 -
Csa03g00390 823 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 57 155 IPR037045 -
Csa03g00390 823 Gene3D - 390 547 - -
Csa03g00390 823 PRINTS Subtilisin serine protease family (S8) signature 183 202 IPR015500 -
Csa03g00390 823 PRINTS Subtilisin serine protease family (S8) signature 256 269 IPR015500 -
Csa03g00390 823 PRINTS Subtilisin serine protease family (S8) signature 608 624 IPR015500 -
Csa03g00390 823 ProSitePatterns Serine proteases, subtilase family, serine active site. 609 619 IPR023828 -
Csa03g00390 823 Pfam Fibronectin type-III domain 723 820 IPR041469 -
Csa03g00390 823 CDD Peptidases_S8_3 153 644 IPR034197 -
Csa03g00390 823 Pfam PA domain 448 525 IPR003137 -
Csa03g00390 823 CDD PA_subtilisin_like 396 540 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00390 - - - csv:101212014 1552.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00390 Csa-Chr3:3265436 Csa03g00392 Csa-Chr3:3280005 0 dispersed
Csa06g02198 Csa-Chr6:19835261 Csa03g00390 Csa-Chr3:3265436 0 dispersed
Csa03g00390 Csa-Chr3:3265436 Csa03g00391 Csa-Chr3:3274637 2.86E-76 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01054 . 23 767 Subtilisin-like Serine Gene Family AT1G01900 57.2 8.6e-231 797.0
Csa05g01053 . 18 770 Subtilisin-like Serine Gene Family AT1G01900 55.0 4.0e-228 788.1
Csa03g02634 . 12 767 Subtilisin-like Serine Gene Family AT1G04110 67.4 7.1e-310 1059.7
Csa03g04296 . 30 768 Subtilisin-like Serine Gene Family AT1G20150 54.0 7.6e-227 783.9
Csa03g04296 . 6 512 Subtilisin-like Serine Gene Family AT1G20160 61.3 1.1e-171 600.1
Csa06g03883 . 9 836 Subtilisin-like Serine Gene Family AT1G30600 64.7 9.6e-313 1069.3
Csa04g00590 . 58 760 Subtilisin-like Serine Gene Family AT1G32940 51.4 3.5e-194 675.2
Csa04g00590 . 58 760 Subtilisin-like Serine Gene Family AT1G32950 50.4 7.8e-194 674.1
Csa04g00590 . 34 760 Subtilisin-like Serine Gene Family AT1G32960 51.6 6.2e-205 711.1
Csa01g03493 . 314 1058 Subtilisin-like Serine Gene Family AT1G62340 56.9 3.3e-244 841.6
Csa07g00232 . 5 771 Subtilisin-like Serine Gene Family AT2G04160 63.6 1.8e-284 975.3
Csa03g00392 . 1459 2201 Subtilisin-like Serine Gene Family AT2G04160 58.8 7.2e-254 873.6
Csa03g00390 . 64 822 Subtilisin-like Serine Gene Family AT2G04160 57.9 2.7e-253 871.7
Csa01g01526 . 1 748 Subtilisin-like Serine Gene Family AT2G04160 54.7 1.5e-235 812.8
Csa01g01525 . 11 770 Subtilisin-like Serine Gene Family AT2G04160 51.0 4.5e-216 748.0
Csa01g02995 . 23 764 Subtilisin-like Serine Gene Family AT2G05920 72.8 0.0e+00 1095.5
Csa06g02998 . 24 760 Subtilisin-like Serine Gene Family AT2G05920 55.3 2.4e-230 795.4
Csa02g01905 . 34 769 Subtilisin-like Serine Gene Family AT2G05920 55.7 2.4e-222 768.8
Csa03g01651 . 61 806 Subtilisin-like Serine Gene Family AT2G05920 51.5 8.4e-215 743.8
Csa07g02348 . 31 762 Subtilisin-like Serine Gene Family AT2G05920 53.2 1.0e-212 736.9
Csa02g01383 . 30 763 Subtilisin-like Serine Gene Family AT2G05920 50.3 2.7e-205 712.2
Csa07g02314 . 26 768 Subtilisin-like Serine Gene Family AT2G05920 51.5 4.3e-203 704.9
Csa05g01053 . 72 768 Subtilisin-like Serine Gene Family AT2G05920 50.1 3.8e-183 638.6
Csa02g00662 CCT 21 817 Subtilisin-like Serine Gene Family AT2G19170 83.1 0.0e+00 1355.5
Csa07g02348 . 1 765 Subtilisin-like Serine Gene Family AT3G14067 64.2 1.6e-285 978.8
Csa06g02998 . 9 760 Subtilisin-like Serine Gene Family AT3G14067 53.7 1.3e-223 773.1
Csa01g02995 . 22 760 Subtilisin-like Serine Gene Family AT3G14067 53.5 1.9e-217 752.7
Csa02g01905 . 20 769 Subtilisin-like Serine Gene Family AT3G14067 50.7 2.4e-209 725.7
Csa07g02314 . 8 774 Subtilisin-like Serine Gene Family AT3G14067 50.6 1.4e-204 709.9
Csa07g02314 . 29 776 Subtilisin-like Serine Gene Family AT3G14240 77.2 0.0e+00 1199.5
Csa02g01383 . 31 772 Subtilisin-like Serine Gene Family AT3G14240 57.9 3.4e-243 838.2
Csa06g02998 . 26 756 Subtilisin-like Serine Gene Family AT3G14240 53.0 9.8e-219 756.9
Csa03g01651 . 62 802 Subtilisin-like Serine Gene Family AT3G14240 50.1 1.1e-212 736.9
Csa01g02995 . 26 756 Subtilisin-like Serine Gene Family AT3G14240 51.5 3.7e-210 728.4
Csa07g02348 . 30 763 Subtilisin-like Serine Gene Family AT3G14240 50.7 2.7e-208 722.2
Csa02g01905 . 36 768 Subtilisin-like Serine Gene Family AT3G14240 50.7 3.6e-205 711.8
Csa05g01060 . 9 567 Subtilisin-like Serine Gene Family AT4G00230 59.9 1.9e-193 672.5
Csa05g01055 . 9 568 Subtilisin-like Serine Gene Family AT4G00230 57.1 3.5e-184 641.7
Csa03g03404 . 1 328 Subtilisin-like Serine Gene Family AT4G00230 50.3 5.8e-86 315.5
Csa04g00590 . 58 760 Subtilisin-like Serine Gene Family AT4G10510 51.1 2.1e-199 692.6
Csa04g00590 . 34 760 Subtilisin-like Serine Gene Family AT4G10520 51.2 6.9e-201 697.6
Csa04g00590 . 34 760 Subtilisin-like Serine Gene Family AT4G10540 51.0 1.0e-207 720.3
Csa04g00590 . 58 760 Subtilisin-like Serine Gene Family AT4G10550 50.5 1.1e-198 690.3
Csa06g03883 . 12 836 Subtilisin-like Serine Gene Family AT4G20430 67.8 0.0e+00 1131.3
Csa01g01136 . 1 284 Subtilisin-like Serine Gene Family AT4G21320 77.2 1.4e-130 462.6
Csa01g01453 . 1 721 Subtilisin-like Serine Gene Family AT4G26330 56.1 2.8e-231 798.5
Csa02g00662 CCT 9 817 Subtilisin-like Serine Gene Family AT4G30020 82.0 0.0e+00 1342.4
Csa02g01383 . 30 772 Subtilisin-like Serine Gene Family AT4G34980 75.0 0.0e+00 1145.6
Csa07g02314 . 16 776 Subtilisin-like Serine Gene Family AT4G34980 54.2 8.4e-231 797.0
Csa03g01651 . 35 805 Subtilisin-like Serine Gene Family AT4G34980 50.3 7.4e-211 730.7
Csa06g02998 . 25 756 Subtilisin-like Serine Gene Family AT4G34980 51.4 3.8e-207 718.4
Csa01g02995 . 12 756 Subtilisin-like Serine Gene Family AT4G34980 50.2 1.0e-204 710.3
Csa05g01060 . 8 565 Subtilisin-like Serine Gene Family AT5G03620 51.5 6.3e-146 514.6
Csa05g00754 . 688 1223 Subtilisin-like Serine Gene Family AT5G03620 50.4 4.1e-145 511.9
Csa05g02711 . 31 560 Subtilisin-like Serine Gene Family AT5G03620 50.3 3.7e-138 488.8
Csa03g03404 . 2 318 Subtilisin-like Serine Gene Family AT5G03620 59.0 3.2e-105 379.4
Csa06g02669 . 1 309 Subtilisin-like Serine Gene Family AT5G03620 57.2 1.3e-95 347.4
Csa01g01728 . 1 772 Subtilisin-like Serine Gene Family AT5G19660 79.8 0.0e+00 1290.8
Csa06g03883 . 34 610 Subtilisin-like Serine Gene Family AT5G44530 70.1 2.3e-242 835.1
Csa06g03738 . 84 789 Subtilisin-like Serine Gene Family AT5G45640 51.2 2.5e-195 679.1
Csa06g03738 . 39 789 Subtilisin-like Serine Gene Family AT5G45650 57.4 6.7e-247 850.5
Csa03g01651 . 46 804 Subtilisin-like Serine Gene Family AT5G51750 72.5 0.0e+00 1153.3
Csa06g02998 . 21 760 Subtilisin-like Serine Gene Family AT5G51750 53.0 5.6e-230 794.3
Csa02g01905 . 12 769 Subtilisin-like Serine Gene Family AT5G51750 51.8 1.6e-224 776.2
Csa01g02995 . 1 760 Subtilisin-like Serine Gene Family AT5G51750 50.6 6.9e-220 760.8
Csa05g02711 . 28 733 Subtilisin-like Serine Gene Family AT5G58830 50.1 3.5e-178 622.1
Csa05g02710 . 1 123 Subtilisin-like Serine Gene Family AT5G59130 58.4 1.8e-36 151.4
Csa05g02711 . 35 732 Subtilisin-like Serine Gene Family AT5G59190 50.3 3.0e-187 652.1
Csa05g00114 . 36 736 Subtilisin-like Serine Gene Family AT5G59190 50.4 5.2e-187 651.4
Csa07g00232 . 12 771 Subtilisin-like Serine Gene Family AT5G59810 59.7 9.1e-265 909.8
Csa01g01526 . 8 751 Subtilisin-like Serine Gene Family AT5G59810 61.3 2.7e-261 898.3
Csa03g00392 . 1459 2204 Subtilisin-like Serine Gene Family AT5G59810 60.8 3.0e-260 894.8
Csa01g01525 . 15 771 Subtilisin-like Serine Gene Family AT5G59810 57.0 4.0e-244 841.3
Csa03g00390 . 69 822 Subtilisin-like Serine Gene Family AT5G59810 54.6 1.1e-228 790.0
Csa03g00396 . 36 720 Subtilisin-like Serine Gene Family AT5G59810 50.9 1.5e-203 706.4
Csa06g02998 . 8 762 Subtilisin-like Serine Gene Family AT5G67360 72.1 0.0e+00 1098.6
Csa02g01905 . 10 771 Subtilisin-like Serine Gene Family AT5G67360 64.8 4.2e-291 997.3
Csa01g02995 . 11 761 Subtilisin-like Serine Gene Family AT5G67360 55.8 4.0e-233 804.7
Csa03g01651 . 62 803 Subtilisin-like Serine Gene Family AT5G67360 54.2 7.3e-227 783.9
Csa07g02348 . 9 762 Subtilisin-like Serine Gene Family AT5G67360 53.9 5.6e-219 757.7
Csa07g02314 . 7 771 Subtilisin-like Serine Gene Family AT5G67360 52.2 1.8e-212 736.1
Csa02g01383 . 6 766 Subtilisin-like Serine Gene Family AT5G67360 51.1 2.6e-208 722.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000094 2 9 4 4 4 9 0 9 9 7 6 10 16 7 9 22 9 5 21 9 7 5 6 12 12 10 2 10 10 2 247
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00390 Csa_Chr03 FPKM 0.0 0.14563 7.207243 8.16686 0.898052 1.187031 1.178035 8.472554 8.725698 7.55628