Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00396 ATGGATTTCATAAGATTAAAGATAAAGTCGATTTCTGCGATGGAGGTCCCTGCGGCGGCGGTGGACACGGCTCTTTCTCCCCTGCACCTCCGCCTCCTCCGTTCTAGGCCTTACATTGTTTATTTGGGGTCGCATCCTCACGGTTCGAGTACTTCCCCATTGGACCATCAACGCGCAACAGCGTCACATTATGATTTGTTGGGTTCAGCGTTGGGAAGCAAAAAGACAGCGGAAGAAGTGATTTTGTACTCTTACAACAAAAACATCAATGGATTTGTTGCCATGCTTGATGAAAAACAAGCAACAGATCTTACAAGTGTTTGGCCAGAATCTAAGAGCTTTAGTGATGAAGGCTATGGACCTATCCCCCCAAGGTGGATGGGAACTTGTCAAAGTGATGCCGACCCCAAGTTTCGTTGTAATAGAAAATTGATTGGAGCAAGATTCTTCAACATAGGCTATGGTGAACTTACTGATACCTTCAATTCTTCAAGAGACAATGTAGGGCATGGAACCCACACTTTATCCATAGCTGGTGGCAATTTTGTACCTGGTGCTAATGTTTTGGGCATGGGCAATGGTACTGTCAAAGGTGGCTCCCCTAGAGCCCGTGTTGCGTCCTATAAGGTTTGTTGGCCAGACGAAACCAACGAGTGTGTGGACCCAAATACCTTAGCTGCCTTTGAAGCTGCAATTGAGGATGGCGTTGATGTTATCTCGATTTCTGTTGGTGGAGAGCCCAAAGAGTTCTTTAGTGATGCACTCTCTGTAGGGGCATTCCATGCAGTTGAGCGAGGTATTGTTGTTGTTTCCTCTGCTGGGAACGTGGGACCAACTCCTGGGACTGTATCAAATGTGTCGCCATGGATTCTAACTGTTGGAGCTAGTACTATTGATAGAGGTTTCACCAATTTTGTGGTCCTGGGGAATAAGAAGAAATTCAAGGGAACAAGCTTTTCTTCTAAGGTGCTGCCAGTTAACAAGTTCTACCCTTTAATCAATGCTGTGGATGCAAAAGCCAACAATGTCTCCGTTAGTGATGCAGAAGTTTGCGACGAGGGCTCACTTGATCCCGAAAAGTTAGCTGGGAAGATTGTGGTTTGCCTTCGAGGAGGTCTTCCGAGAGTATCAAAGGGCTATGTAGCTGCCAAGGCAGGGGCTGTTGGAATGCTCGTGGTCAACGATGAGGAAAGTGGGAATGCAATTTTAACTGATTCACATGTCCTTCCAGCTTCTCATGTAACCTACGATGACAGCATATCCATCTTCCAATACATCAATTCTACCAAGACACCAATGGCTTACATCAGTTCTGTGATGACAGAACTGGAAATCACACCATCCCCAGTAGTGGCTGATTTCTCATCAAGAGGCCCCAATACAATAGAGGAGTCAATCCTTAAGCCTGATATAATAGCACCTGGTGTGAATATACTGGCGGCTTACCCCGACGGCATACCATTGACAGAAGCACCATTGGACGATCGTCAATCTCCTTTTAAAGTAGATTCTGGCACATCCATGGCCTGCCCCCATATTGCTGGCATTGTAGGCCTTCTCAAAACCCTAAACCCCAAATGGAGTCCAGCAGCTATTAAATCTGCAATCATGACAACAGCCAAAACAACAGACAACAATTTCAATCCAATTGTAGACTACGGAGGACTCGAAGCAAACCCATTAGCATATGGTGCCGGACATGTTAATCCAAACAGTGCAATGGACCCTGGGCTAGTTTACGACATTACAATCGACGATTACCTCAATTTCTTATGTGCTAGAGGCTACAATACAACACAAATAAAAAGAATATCAAAGAAGAACTTTGTTTGTGATAAGTCATTCAAAGTGACGGATTTGAATTACCCATCAATCTCAGTTACAAATCTGAAAATGGGTCCTGTGGCGATCAATCGAAAATTGAAGAATGTGGGAAGTCCAGGGACATACGTTGCTAGAGTGAAGACGCCATTGGAAGTTTCAATCATTGTTGAGCCAAGAATATTAGATTTTACTGCTATGGATGAAGAGAAAAGCTTCAAGGTGTTGTTGAATAGAAGTGGAAAGGGAAAGCAAGAAGGTTATGTGTTTGGGGAATTAGTATGGACTGATGTCAATCGCCATGTTAGGACCCCAATTGTTGTGAATTTAGGAGAATAA 2160 44.31 MDFIRLKIKSISAMEVPAAAVDTALSPLHLRLLRSRPYIVYLGSHPHGSSTSPLDHQRATASHYDLLGSALGSKKTAEEVILYSYNKNINGFVAMLDEKQATDLTSVWPESKSFSDEGYGPIPPRWMGTCQSDADPKFRCNRKLIGARFFNIGYGELTDTFNSSRDNVGHGTHTLSIAGGNFVPGANVLGMGNGTVKGGSPRARVASYKVCWPDETNECVDPNTLAAFEAAIEDGVDVISISVGGEPKEFFSDALSVGAFHAVERGIVVVSSAGNVGPTPGTVSNVSPWILTVGASTIDRGFTNFVVLGNKKKFKGTSFSSKVLPVNKFYPLINAVDAKANNVSVSDAEVCDEGSLDPEKLAGKIVVCLRGGLPRVSKGYVAAKAGAVGMLVVNDEESGNAILTDSHVLPASHVTYDDSISIFQYINSTKTPMAYISSVMTELEITPSPVVADFSSRGPNTIEESILKPDIIAPGVNILAAYPDGIPLTEAPLDDRQSPFKVDSGTSMACPHIAGIVGLLKTLNPKWSPAAIKSAIMTTAKTTDNNFNPIVDYGGLEANPLAYGAGHVNPNSAMDPGLVYDITIDDYLNFLCARGYNTTQIKRISKKNFVCDKSFKVTDLNYPSISVTNLKMGPVAINRKLKNVGSPGTYVARVKTPLEVSIIVEPRILDFTAMDEEKSFKVLLNRSGKGKQEGYVFGELVWTDVNRHVRTPIVVNLGE* 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3323657 3329632 - CsaV3_3G003960.1 Csa03g00396 521301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00396 719 Pfam Fibronectin type-III domain 619 715 IPR041469 -
Csa03g00396 719 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 105 719 IPR045051 -
Csa03g00396 719 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 36 105 IPR045051 -
Csa03g00396 719 Pfam Peptidase inhibitor I9 38 104 IPR010259 -
Csa03g00396 719 Gene3D - 299 443 - -
Csa03g00396 719 Gene3D - 591 717 - -
Csa03g00396 719 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 105 719 - -
Csa03g00396 719 SUPERFAMILY PA domain 337 427 IPR046450 -
Csa03g00396 719 ProSitePatterns Serine proteases, subtilase family, serine active site. 505 515 IPR023828 -
Csa03g00396 719 Gene3D Peptidase S8/S53 domain 105 587 IPR036852 GO:0004252|GO:0006508
Csa03g00396 719 ProSiteProfiles Serine proteases, subtilase domain profile. 1 574 - -
Csa03g00396 719 CDD Peptidases_S8_3 56 540 IPR034197 -
Csa03g00396 719 SUPERFAMILY Subtilisin-like 136 578 IPR036852 GO:0004252|GO:0006508
Csa03g00396 719 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 36 105 - -
Csa03g00396 719 CDD PA_subtilisin_like 306 436 - -
Csa03g00396 719 PRINTS Subtilisin serine protease family (S8) signature 504 520 IPR015500 -
Csa03g00396 719 PRINTS Subtilisin serine protease family (S8) signature 166 179 IPR015500 -
Csa03g00396 719 Pfam Subtilase family 158 547 IPR000209 GO:0006508|GO:0008236
Csa03g00396 719 Pfam PA domain 350 418 IPR003137 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00391 Csa-Chr3:3274637 Csa03g00396 Csa-Chr3:3323657 6.05E-58 dispersed
Csa03g00396 Csa-Chr3:3323657 Csa07g00232 Csa-Chr7:1828536 0 dispersed
Csa03g00392 Csa-Chr3:3280005 Csa03g00396 Csa-Chr3:3323657 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00396 - - cmo:103491006 1152.12