Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00397 ATGGCTTCCCCTGGGAATCCAAACCCAAATCCCACAAACCCACCTTTTGATGTCCAGAAATTCTTTAAACCCACCACCATTTCAAACCCTACACCGACTTCCCAAAACCCTACCCTCATGAATTCACCTCCATTTCCACCTCCTTCTTCATCTTACCCTCCTCCCACTGGTCCTTTCTCTTACCCACTTCAAAACGCCCCATTCCATCATCCTTATCATTCTCCCCACCATCCCAATCAACTTCCTTACTCTCAAGACCAATTCTCTAATCTTCATCATCAGCGTTCTCTTTCTTACCCCACTCCCCCCCTTCAGCCTTCTCCTCCTCCGGTTAATGTTGTTGTTCCTCAGAATAATCCGGCTCAGAGCTCTGGTGCGAGGATAATGGCCATGATTAGAGCTCCTGGTTCTAATCTCGAACAATTTCCTCAACCCTCTGCTCCATTGGGTTCGATGCCATCTCCTTCTTCGGCTGTTCCTGAATCTTCAACGCCTCCCCCTAATGTTCCTATTATGACTACCATTCCCATGATGCAGGGGGTTAATCCTGGGATTTCGCCTACTGGGCCTGTTCGAATGCCGAGCAGTAAGCTTCCGAAAGGGCGGCATTTAATTGGTGATCATGTGGTGTATGATGTGAATGTTAGGTTGCAAGGAGAGATCCAGCCACAGCTTGAAGTGACGCCAATTACCAAATATGGTTCAGATCCTCAGCTTGTGTTGGGACGTCAAATTGCAGTTAACAAGACATATATATGTTACGGATTGAAACAGGGGAATATTCGAGTTCTTAATATCAATACCGCTCTAAGATCTTTGTTTCGAGGCCACGAAAAGAGGGTCACTGACATGGCATTTTTTGCTGAAGATGTTCACCTTTTGGCTAGCGTTGACGTAGGTGGACGAGTTTATGTCTGGAAGATTTCTGAGGGCCCTGATGAAGAAACAAAGCCGCAAATCACTGGGAAAGTTGTTATCTCCCTTCACATGGAAGGAGGAGAAGGAGAAATTGTGCATCCACGAGTTTGCTGGCATTGTCACAAACAGGAAGTTTTGGTAGTTGGATTTGGGAAGGCTGTTCTCAGGATTGACACAACCAAAGTTGGGAAGGGTGAAAGCTTTTCTGCTGAATCTCCTCTCAAATTTTCTCTTGATAAGTTGATTGATGGGGTCCAGCTTGTTGGGAAGCATGATGGAGAGGTGACTGAGTTGTCCATGTGCCAGTGGATGACTTCACGATTGGTTTCTGCTTCTATGGATGGAACGATCAAAATCTGGGAAGACCGCAAGACATCACCTTTGCTGGTTTTGAGACCACATGATGGCCAACCGGTTAATGCAGCCACTTTCTTGACTGCTCCTAATCGACCAGATCACATTGTACTCATAACAGCTGGGCCTTTGAATCGGGAAGTGAAAATATGGTCATCCGCAAGTGAGGAAGGTTGGCTGCTTCCTAGTGACGCTGAATCATGGAAATGCACCCAGACCCTAGAATTGAAGAGTTCAGCTGAAAGCCAAGTTGAAGAGGCTTTCTTTAATCAAATTGTAGCACTGTCTCAAGCTGGCCTCCTTTTGCTTGCTAATGCTAAGAAAAACGCTATATATGCAATTCACTTGGATTATGGTCTTAATCCAGCTTCGACACGGATGGATTACATAGCAGAGTTTACTGTCACGATGCCCATTTTAAGTTTTACTGGAACAAGTGAAATATTAGACCGTCTAACACATATTGTCCAGGTTTATTGCGTACAAACACAAGCGATTCAGCAGTATGCTTTGGACTTGTCTCAGTGCTTACCTCCACCACTGGACAATGTAGGTTTAGAGAAGGCAGATTCTAGTGTTTCACAGGATTCTGCTGGTGTGGAAGGTCTGGCTGCATTGTTTCCTTCTGGGAGCAAACCAACTGACACACCCTTCACTAGTTCTACACCCAGGGGTTCAGTGCTGGTCAATGGCCCTGAAAGTGCTATTGCAGAAAGATATCCTGCTAGCACCAATTCTCAAGATGCAGTGTTGGTTGCAAATACGGAATCTAAACCTGCTACACTGTCGCCCGTACCTAGTAACACAGACATTGTCTCTACTGCGTCACCTCCACTTCCTCTGAGCCCCCGCTTGTCCAGAAATCTGTCTGGTTTTAGAAGTCCAGTGGTTGCCTTTGACCCTATTAGTGCAGTTAGCGATCATGCCGGTGACCGACGTGGTAATGATTATACAGTCAACCGACAATTGGATGCCATGCACACAAATTTGTCTGAAGTGTCTTCCTTGGATGATGAATCCAGAAACAATGAGGAGAAAATTGCACGGGAAGATTTGTCTAATGTCCTCAGTCCTCCTATCGTGTTTAAGCATCCAACTCATCTTATTACTCCCTCTGAGATACTGATGGCTGTTTCTTCGTCTGAAACAACCAATATCATTGAAGGTGGTAAGAGTGATAGTGAGACAAATATCCAGGATGTAGTGGTTAACAATGATAATGAAGATGCGGAGCTGGAGGTTAAAGAGGTGGGTGAAATGAAGTCTCCTCAGAATGGTGAATATGGTAGTAGAGGTGAGCCTCAAAACCTTTCTCTGGAGAACAAGGAAAAATATTTCTGCTCACAAGCGTCAGATCTTGGTATGGAAGTGGCCCGGGAGTGTAGTGCACTATCATCTGAAACTTATGTCATTGAGGAAGCCCCGCAAGTTGATGGTAATATAATAGCATCAGAGGTTGATTCCCAAGCTGGTGAGGGAGATAGAACTTCCGGCAAAGATGTGTCTGATAAGCTTCCTGAATCATCTATGTCGACGACTTTGCAAATTCCAACTCCTAGTTCAAAGGGGAAAAAGAACAAGGGGAAAAATTCTCAAGCTTCAGGCTTTGTTTCTCCATCTCCAAGTGCTTTCAATTCTAATGAATCGTCCATTGAACCTTGTGGTAGTTCAAGCCTTCCCCAAAGCGATGCAGCTTTCCCTCCTTTACTGGCCATCCAAGATACGTTGAATCAGATAATGAGCACTCAGAAAGAAATGCAAAAGCAGATGCAGATGACATTTTCAGTTCCAGTCACGAAAGAAGGTAAAAGGCTGGAAGCAGCTCTTGGACGGAGCATGGAGAAAGCATTGAAAGCGAATCATGATGCATTATGGGCTCGGATTCAGGAAGAAAGTGCTAAAAATGAGAAATTGTTGCGAGAAACTACACAAAAAGTAACTAGTTTAGTTGCAAACTTTGTGAACAAGGACTTGCCTGCCTTTTTAGAGAAAGCTATGAAGAAGGAAATGTCTGCCATTGGACCTGCTGTGGTTCGCACAATAACACCCGCTATTGAGAAAACAATTTCTTCTGCCATCACTGATTCTTTCCAGAGAGGAGTAGGTGATAAGGCAGTAAATCAACTAGAGAAATCTGTTAGCTCAAAGCTTGAAGCTACTGTTGCTAGGCACATCCAAGCGCAGTTTCAAACATCTGGCAAGCAAGCTCTGCAGGATGCATTAAAATCTAGTTTTGAAGCATCAGTGATTCCAGCCTTTGAAATGTCGTGCAAAACCATGTTTGAGCAAGTAGATTCTACCTTTCAGAAAGGACTGGTTGAACATTCAGCTGCAGCTCAACAACACTTTGACTCTTCACATTCTCCATTGGCACATGCTTTGAGGGATTCTATAAATTCAGCTTCAACAATTGCGCAGTCCTTGAGTGGAGAATTGGCTGAAGGCCAAAGAAAACTGATAGCCCTTGCGACTGCAGGAGCAAATGCTAGTTCATTAAATCCTTTAGTTAGCCAACTAAGCAATGGGCCATTGGGTGCTCTTCATGAGAAGGTTGAGGTTCCTTTGGATCCTACAAAAGAACTGTCGAGATTGTTATCTGAAAGGAAATACGAGGAAGCTTTCACCGCTGCTTTACAGAGAAGTGATGTGAACATTGTATCTTGGTTATGTTCTCAGGTCGATCTTAGAGCCGTTTTGGCAAATCCCCTTGCTTTGAGTCAAGGAGTACTGCTGTCACTTTTGCAACAATTAGCATGTGATATCAATAAGGATAGATCCCGGAAAATTGCATGGATGACTGAAGTGGCTGCTGCTGTAAATCCTGCAGACCCAATGATAGCGATGCACATACGGCCTATCTTTGAACAGGTGTATCAGATTTTGAACCATCAACGGAGCTTGCCAACTGTTTCTCCAGTCGAGCTCACTGGCATTCGCATAATCATGCATCTTGTCAACTCCATGATGGTAACTTGTAAATGA 4254 44.38 MASPGNPNPNPTNPPFDVQKFFKPTTISNPTPTSQNPTLMNSPPFPPPSSSYPPPTGPFSYPLQNAPFHHPYHSPHHPNQLPYSQDQFSNLHHQRSLSYPTPPLQPSPPPVNVVVPQNNPAQSSGARIMAMIRAPGSNLEQFPQPSAPLGSMPSPSSAVPESSTPPPNVPIMTTIPMMQGVNPGISPTGPVRMPSSKLPKGRHLIGDHVVYDVNVRLQGEIQPQLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDVGGRVYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVGFGKAVLRIDTTKVGKGESFSAESPLKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGTIKIWEDRKTSPLLVLRPHDGQPVNAATFLTAPNRPDHIVLITAGPLNREVKIWSSASEEGWLLPSDAESWKCTQTLELKSSAESQVEEAFFNQIVALSQAGLLLLANAKKNAIYAIHLDYGLNPASTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYALDLSQCLPPPLDNVGLEKADSSVSQDSAGVEGLAALFPSGSKPTDTPFTSSTPRGSVLVNGPESAIAERYPASTNSQDAVLVANTESKPATLSPVPSNTDIVSTASPPLPLSPRLSRNLSGFRSPVVAFDPISAVSDHAGDRRGNDYTVNRQLDAMHTNLSEVSSLDDESRNNEEKIAREDLSNVLSPPIVFKHPTHLITPSEILMAVSSSETTNIIEGGKSDSETNIQDVVVNNDNEDAELEVKEVGEMKSPQNGEYGSRGEPQNLSLENKEKYFCSQASDLGMEVARECSALSSETYVIEEAPQVDGNIIASEVDSQAGEGDRTSGKDVSDKLPESSMSTTLQIPTPSSKGKKNKGKNSQASGFVSPSPSAFNSNESSIEPCGSSSLPQSDAAFPPLLAIQDTLNQIMSTQKEMQKQMQMTFSVPVTKEGKRLEAALGRSMEKALKANHDALWARIQEESAKNEKLLRETTQKVTSLVANFVNKDLPAFLEKAMKKEMSAIGPAVVRTITPAIEKTISSAITDSFQRGVGDKAVNQLEKSVSSKLEATVARHIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKTMFEQVDSTFQKGLVEHSAAAQQHFDSSHSPLAHALRDSINSASTIAQSLSGELAEGQRKLIALATAGANASSLNPLVSQLSNGPLGALHEKVEVPLDPTKELSRLLSERKYEEAFTAALQRSDVNIVSWLCSQVDLRAVLANPLALSQGVLLSLLQQLACDINKDRSRKIAWMTEVAAAVNPADPMIAMHIRPIFEQVYQILNHQRSLPTVSPVELTGIRIIMHLVNSMMVTCK* 1418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3338660 3350610 + CsaV3_3G003970.1 Csa03g00397 521302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00397 1417 MobiDBLite consensus disorder prediction 910 986 - -
Csa03g00397 1417 MobiDBLite consensus disorder prediction 37 61 - -
Csa03g00397 1417 MobiDBLite consensus disorder prediction 138 165 - -
Csa03g00397 1417 MobiDBLite consensus disorder prediction 927 986 - -
Csa03g00397 1417 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 316 IPR001680 GO:0005515
Csa03g00397 1417 Gene3D - 1328 1417 IPR044938 -
Csa03g00397 1417 Gene3D - 222 536 IPR015943 GO:0005515
Csa03g00397 1417 SMART WD40_4 390 427 IPR001680 GO:0005515
Csa03g00397 1417 SMART WD40_4 267 307 IPR001680 GO:0005515
Csa03g00397 1417 SMART WD40_4 430 476 IPR001680 GO:0005515
Csa03g00397 1417 SUPERFAMILY WD40 repeat-like 248 507 IPR036322 GO:0005515
Csa03g00397 1417 MobiDBLite consensus disorder prediction 754 774 - -
Csa03g00397 1417 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 427 IPR001680 GO:0005515
Csa03g00397 1417 MobiDBLite consensus disorder prediction 139 158 - -
Csa03g00397 1417 MobiDBLite consensus disorder prediction 1 85 - -
Csa03g00397 1417 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 226 540 IPR032401 -
Csa03g00397 1417 MobiDBLite consensus disorder prediction 842 861 - -
Csa03g00397 1417 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 22 1417 - -
Csa03g00397 1417 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 22 1417 IPR045152 GO:0031087
Csa03g00397 1417 MobiDBLite consensus disorder prediction 22 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00397 K12616 EDC4; enhancer of mRNA-decapping protein 4 - csv:101211283 2650.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g749 . . . . Bpe09g00103 . Bma10g00607 . . . . . . . . . . . . . . . . . Cla10g00390 Cam10g0390 Cec10g0412 Cco10g0402 Clacu10g0397 Cmu10g1230 Cre10g0645 . . . Cone15ag1288 . Csa03g00397 . Cme06g02727 . Blo10g00884 Bda05g00666 . . . . . Sed08g2886 . . . . . . Cpe14g00796 . Bhi11g00432 Tan01g1873 Cmetu06g2534 . . Mch10g1408 . . . . . . . . . . Chy06g01916 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004211 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00397 Csa_Chr03 FPKM 1.350898 2.472284 10.62175 11.147094 0.0 0.0 0.0 2.224484 2.187307 2.000403