Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00398 ATGTTGGATAGTTTTGCTTACAAGAGCATGAAGATTGTAATCTTCACAAATAAACTCAACTTCCTTATGCCTTTTGGGCCTATAGCAATTCTTGTGGATGAGTTGGCTGGACACAATAGTTGGGTCTTCCTCCTGAGTCTATTGGGTATCATACCGTTGGCGGAGCGCTTAGGTTATGCCACAGAGCAGCTAGCTTTTTACACTGGACCTACAGCTGGTGGTCTTCTAAATGCTACTTTTGGAAATGCAACAGAACTGATTATATCTATTTTTGCACTGAGAAGTCAAATGATACGTGTTGTTCAGCTGTCATTGCTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCAATAAAAAGGAACAGACGTTTAACAAGGCAACTGCTGTTGTCAACTCAGGATTGTTGTTAATGGCTGTCATGGGCCTGCTCTTTCCCGCTCTTCTTCACTACACCCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTCTCGAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGATGAGTCAAATGAATCTTTATTCTTCTGTTTATGAGGAAGAAACTCACAGTGAAGAAAGCTCAGATGAAGATGAAGCTCCTGAGATTTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGTCTGGATCTCTGTTCTATCAAAATATTTAGTCGATGCAATCGAAATTGCATCTGAATCATTGAAAATCCCAGTGTCCTTTATTAGTGTTATACTGCTTCCGATTGTGGGGAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCTATGAAAGATAAGCTAGACATTTCTCTTGGTGTAGCTATCGGATCATCAACTCAGATATCTATGTTTGGGATTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGACAACCAATGGACTTGAACTTTCAACTCTTTGAGACGGCAACACTTTTTATAACTGTAATAGTCGTAGCTTTCTTGCTCCAGGAAGGAACTTCAAATTACTTCAAGGGACTGATGCTTATCCTTTGTTATCTGATAGTTGCAGCTAGCTTTTTCGTACACGTCGATCCTCCTTTATCCGAAAATGTTAAGAGAGGACAGTGGACTCCTGAAGAAGATAATAAGCTTTCGTCCTACATTGCCCAGCATGGCACTCGCAACTGGCGCCTTATTCCCAAGAATGCTGGTCTCCAAAGATGTGGGAAGAGCTGCAGGCTACGTTGGACTAATTACCTGCGCCCCGACCTTAAGCATGGCCAGTTTTCGGACATTGAAGAGCAAACTATTGTCAAGCTACATTCTGTTGTTGGCAACAGGTGGTCACTGATTGCAGCTCAATTACCCGGTCGCACGGACAATGACGTCAAGAATCACTGGAACACTAAGCTGAAGAAGAAGCTATCAGGTATGGGAATTGATCCAGTCACTCACAAACCATTTTCCCATCTCATGGCTGAAATTGCCACCACTCTGGCCCCACCACAAGTTGCCCATCTTGCTGAAGCAGCACTTGGCTGTTTCAAAGACGAAATGCTTCACCTTTTGACTAAGAAGCGTGTCGATTTCCAGCTTCAACAGGCTAACATACCACCCGGAACTTCCACAGGAACTTACATCCACGGCAAAGAAAATGAGAGAGATGGTACTGTTGAGAATATCAAACTTGGTTTGTCAAGAGCCATTCAACAGCCTGATCTCATCCCCCCTTATAAGCCTTGGAGTTCTGCTGATGCAGCAGGGACAAGCAATTGTTTCCCACAATCGACATCGGGATTTCAATATGCTCCATTGACGTTCGGCAGCGAGGGGGATGGGTCGTCGTGGAGCCAGAGTATATGTACCGGAAGCACGTGCACAGCAGGAGAACAGCAAGGGCAACTACATGAAATCCTTGAAGAAAATGAAGAGGGGCTATCAGAGGGTGGAAAAGAGATAAGAAATGGGACAAGTATATTCAGTTCAGACTCAGTGTTGTGGGATTTACCTTGTGATGATCTGATGAATCCCATTGTTTGA 2079 43.82 MLDSFAYKSMKIVIFTNKLNFLMPFGPIAILVDELAGHNSWVFLLSLLGIIPLAERLGYATEQLAFYTGPTAGGLLNATFGNATELIISIFALRSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFNKKEQTFNKATAVVNSGLLLMAVMGLLFPALLHYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLMSQMNLYSSVYEEETHSEESSDEDEAPEISKWESVIWLSILTVWISVLSKYLVDAIEIASESLKIPVSFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFQLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPLSENVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDIEEQTIVKLHSVVGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQVAHLAEAALGCFKDEMLHLLTKKRVDFQLQQANIPPGTSTGTYIHGKENERDGTVENIKLGLSRAIQQPDLIPPYKPWSSADAAGTSNCFPQSTSGFQYAPLTFGSEGDGSSWSQSICTGSTCTAGEQQGQLHEILEENEEGLSEGGKEIRNGTSIFSSDSVLWDLPCDDLMNPIV* 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3354246 3359130 + CsaV3_3G003980.1 Csa03g00398 521303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00398 692 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 438 488 IPR017930 -
Csa03g00398 692 TIGRFAM caca2: calcium/proton exchanger 10 373 - -
Csa03g00398 692 TIGRFAM cax: calcium/proton exchanger 23 373 IPR004798 GO:0006816|GO:0015369
Csa03g00398 692 SUPERFAMILY Homeodomain-like 383 480 IPR009057 -
Csa03g00398 692 Pfam Myb-like DNA-binding domain 440 482 IPR001005 -
Csa03g00398 692 Pfam Myb-like DNA-binding domain 386 433 IPR001005 -
Csa03g00398 692 Gene3D - 386 438 - -
Csa03g00398 692 ProSiteProfiles Myb-like domain profile. 381 433 IPR001005 -
Csa03g00398 692 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 6 379 IPR004713 GO:0006812|GO:0008324|GO:0016021
Csa03g00398 692 Gene3D - 441 500 - -
Csa03g00398 692 Pfam Sodium/calcium exchanger protein 231 370 IPR004837 GO:0016021|GO:0055085
Csa03g00398 692 Pfam Sodium/calcium exchanger protein 41 197 IPR004837 GO:0016021|GO:0055085
Csa03g00398 692 ProSiteProfiles Myb-like domain profile. 434 484 IPR001005 -
Csa03g00398 692 SMART sant 385 435 IPR001005 -
Csa03g00398 692 SMART sant 438 486 IPR001005 -
Csa03g00398 692 Gene3D - 217 374 IPR044880 -
Csa03g00398 692 Gene3D - 70 209 IPR044880 -
Csa03g00398 692 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 6 379 - -
Csa03g00398 692 CDD SANT 389 433 IPR001005 -
Csa03g00398 692 CDD SANT 442 484 IPR001005 -
Csa03g00398 692 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 381 437 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00199 Csa-Chr1:1301190 Csa03g00398 Csa-Chr3:3354246 8.10E-59 dispersed
Csa03g00398 Csa-Chr3:3354246 Csa03g02811 Csa-Chr3:26947129 0 dispersed
Csa03g00398 Csa-Chr3:3354246 Csa06g00979 Csa-Chr6:7944528 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31102 PF01699 Na_Ca_ex 1.50E-21 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00398 K07300 - csv:101205761 662.144