Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00399 ATGCATCTCTACAATGCTTGGCTTCCACCCCCTGTTGCTCTGGAAACCACCAAAGAGAAGGAATCTTTCGCTCTTGTCGTCAATTCTCTCAAGGATTCTTATCGCCCTGATGATCTTGATTCTGTTTATTCCACTCTCAAATGGGTCTCTGTTATTGACCTTTTTATCAAAGCCAAAAGCGAAGTATCATTGGAAGATGTGGCTGCTATTGTGGATATTGGGTTAGAACTATTCCACATGTCACAAGACAAGCTTTATGCACAGGTCAGATGGGGCAATATCCTAGTCAGAATACTAAACAAGTATTCGAAGAGGCTTTCCTTGAAAGTTCAGTGGCGACCTCTGTACAACACTCTGGTTCATACACATTTTACTAGGAACACTGGTCCTGAAGGTTGGAGGTTAAGGCAGCGTCATTTTGAAGCAATAACCTCTCTTGTTAGGTCTTGCCGAAGATTCTTCCCAGCCGGTTCTGCTGCTGATATATGGGCCGAGTTTAGATCTATGCTGGACAATCCATGGCATAATTCATCCTTTGAGGGTTCTGGTTTTGTCAGACTGTTTCTTCCTACCAATTTAGACAACCAAGACTTTTTTTCACACAATTGGATTGAAGAGTGTATGAAGTACTGGGACTCAATTCCAAATTGCCAGTTTTGGAACAGTCAGTGGGCTGCCATTATAGCTCGTGTTGTCAAGAATTACAGTTTCATAGACTGGGAGTGTTTTTTGCCTACACTTTTCACTAGGTTCTTAAACATGTTTGAGGTTCCAGTGGCAAACGGTAGTGGATCATATCCATTTTCTGTGGATGTTCCTCGAAACACCAGGTTCTTATTTTCCAATAAGATGGGAACCCCATCTAAAGCCATTGCAAAATCAATCGTATATCTACTAAAGCCTGGTAGTTCAGCACAGCTTCACCTTGAGAAATTGGTCAACCTTCTCGAACAATACTATCATCCTTCTAATGGTGGGCGTTGGACTTATGTGTTGGACCAATTTTTGCTTCATTTGGTTTTTACCTTCCGGAAACGACTTCAGGCAGAGCAGAAAGCAGATGAGAATAATCAGAACAAGCTGTATTTAGGACCATCAGAAAGAAAATCGTTTGTCAAAACAATCCTAAAGTTAATTGATCGTGGTCAGTATAGCAAAAATGAATATCTTGCTGACACAGTTGCAGCTGCAACCTCTATTTTATCTTATGTAGAACCTTCTTTGGTTCTTCCCTTTGTGGCCTATCGATTTGTTATGGCCTTGGAGACGATGACTGCTACCCACCAGTTGAAAACTGCTGTTATGTCAGTAGCATTTGTTGGGCGTCCATTATTTCTGACATCTTTGTCAGCTTCAACTGTAAGGTCATCTGATCTTGTTGCTGATGATAAGTTTGATGATCTTCTCATGATTTCACTTTCCAACGCCTTACTTGGTATGGATGCCAATGATCCTCCTAAAACGTTGGCCACCATGCAATTAATTGGTTCTCTATTCTCCAATTTAGCTTCTTTGAATGATAACTCAGATGAGCTGTCTATTATTCCAATGATCCGATTTTCCGAATGGTTGGATGAGTTCTTATGTCGCCTATTTTCCTTACTTGTGGACCTGGAACCCAGCAGTGTTCTGAATGATGGCCTACTTTCATCATCAGCTTCAGGAACTTTTCTTGTTGACGAGGGGCCTTACTACTACTGTATGCTTGAAATCTTGCTTGGAAGGCTTTCAAAACCATTATTTGCTCAGGCCTTGAAGAAAATTTCGAAATTTGTCAAGACAAATATTCTTCCTGGTGCAGTTGCAGAGGTTGGACTTCTTTGTTGTGCATGTGTTCATTCTGATCCAGAAGAGGCAGTTGCTCAACTTGTTGCGCCAGTTTTGTCATCTGCTATGTCCTCTATGAAAACAATGCCTAGTACAGAATTTGGAGGGGGAGGAAAATCCAAGGAAAAAACAGCACTTTCTCCAGCTCTTGAAACCGCAATTGACTATCACTTGAAGATGTTATCTGTAGCCGTCAGTTTTGGAGGCCCAGCACTACTTCCTTATAAAGACCAATTCAAGGAAGCTATTGCATGTGGTTTTGATTCTCCATCATGGAAGGTGAACGGGGCTGCTGATCATCTTCTTAGGTCTCTCCTAGGGAGTTTGATTCTCTATTATCCTATTGATCAGTACATGTGCACGGTACGTCACCCTGATGTTTCAGCATTAGAGGAATGGATCAGTACAAAAGATTATTCAAATGACGAGTCACCATTAGTTATCCCCAAGTGGCACATTCCTAATGATGAAGAAATTCAGTTTGCAAATGAATTATTGGATCTTCATTTTCAATCAGCTTTGGATGATCTGTTAAAAATTTGTGAAAGCAAAACCCATGCTGATCCAGGAGATGAGAAAGATCACTTGAAAGTGATTCTATTGCGCATTGATTCTTCCTTGCAAGGTGTTTTGTCTTGCTTGCCTGATTTCATTCCATCCGTGAAGAATGGGAAGGTTGGAAGTTCAGTTCATTCTTTCTTCATAGCTGGGGCATCAGGTCCAAGTGTTGGTTCCACTAAATTAAGGGAAAAAGCTGCCGAAATTATACATATAGCCTGCAGGTATTTGCTGGAAAAAAAAGCTGATGACAATGGTTTATTGATGCTCATTATTCGCATAATGAATGCTTTGGGAAATTATGGTAGTCTGGAATATGATGAATGGTCCAACCATAGGCATGCTTGGAAGTTGGAATCCGCTGCTATTATTGAGCCTCCTACAAATTTTATCATGTCCACTTGCTCTAAAGGCAAGAAAAGGCCAAGGTGGGCACTTATTGACAAAGCATACATGCACAGTACGTGGAGATCATCACAATCGTCCTACCATTTATACCGAGTTTCTGGAAATTTCTGTCCATCAGAGCATGTGATTCTTCTGGTGGATGATCTCTTACAGCTCTCCTTGCACAGTTATGAAAATGTTCGTGTCCATGCTGGGAAGTATCTTATAAAGTTGCTAAAGAGGTGGCCATCTATGATTTCAAAGTGTGTTCTCTCTCTTTCTGAGAATTTAAAGAATGCTGAGTCACCTGAATATGCTGTACTAGGTTCCTGTACAATTCTGGCCACCCAACCAGTTCTGAAGCATATAACAGTGAATTCAAAGTCGTTTTCATCATTTATTTTTGGAATTCTTTCAAGCTCCCATCATGAATCACTGAAAGCCCAGAAAGCAATCAATGAGCTATTTGTCAAATTTAACATCCACTTTTCTGGAGTATCTAAGAGCATTTTCTTAACATCCGAGAAACAAATGGATGAAATGGATTTTGCTGCTTTGGTTTATAAGCTTAGGTCCATGAGTTTTCATTCTACCAGCTTACACTGGAGGTACAATTTGATGGCTAACAGAGTTTTACTTCTATTGGCGATGGCATCTCGGAATAATCCAAGCTCCTCAAATATCCTCAGTGAAACTACCGGTCACTTCTTGATGAATTTGAAAAGTCATCTCCCCCAAACTAGAATACTTGCAATCTCGGCCTTGAATACTTTATTAAAAGAATCACCTTACAAAGTTTCGGTTCAGGAGGAATGTGACTCGCCTGTGGAGATGCAAATAGATTCAAAGTCATCCCTTGAAGGCGCTTTGACACAAATTTTTCAGGAAGAAGGATTTTTCAGCGAGACTTTTAACAGTCTCTCTCATCTTCACATAACTGATGCTGATGCTGCAGCCTCTGGTGGAAACCATCGAAACTCTTCTTTCCAGAGTCATGCCGACAAATCAATTACCCGTTTTTATTTTGACTTCTCAGCTTCATGGCCCCGCACTCCTAGTTGGATATCATATATAGGAAGTGGTACTTTTTACCCAAATTTTGCTCGGATTTTCAAACGGTTGATACAGGAATGTGGGGTCACTGTACTATTACCACTAAAGAGTACGTTGGAAGAATTTGCAAATTCAAGCGAGAGGTCTAAGCAGTGTGTTGCTGCTGAAGCATTGGCTGGCATATTGCATTCTGATGTCAATGGCCTTTTAGAGGCTTGGGAAAGCTGGATTATGGTTCAGTTACAGAATATTATTATGGCACAGTCTGTAGAATCTACACCAGATTGGGCAGCTTGCATTCGTTATGCGGTCACTGGAAAGGGGAAACATGGAACAACAGTTCCTTTCTTAAGGCAACAAATTTTGGAGTGTTTGGTTAGACCTTTAACTGCAGCAGCAACTACCACTATTGTAGCCAAGCGCTATGCTTTTCTATCGGCTTCACTTGTAGAATTATCCCCTTCAAAAATGCCATCAGCCGAGATACACATACATATTAGACTTCTTGAGGAGCTACTTGGAAATATGTGTCATTCTTCTTCCCAAGTAAGGGAAGTAATTGGTGTGACTCTTTCTGTTGTTTGCTCAAACATTAGACTTCTCACATCTCATCCTCACGATCATTCACTTGAAGATGTTGATGTTGAACTTAAAGAGGAAAGATGGGCTAAGCTCTTAATCGAACGCACAACTCAGGCAGTAAAGAACATTCAAAACTCAAGCCATTCTTTTAAGTTGGACACAGCTCAAAATGGACACTCAAATGTTGATTCAGAAGATGATGTCAAATGGATGGAAACGCTATTCTATTTTCTCCTATCATTAATGAAGTCAGGAAGATCTTCTCAGTTGTTAGATGTTATTGTGGGTCTTCTATATCCTGTAATTTCTTTGCAGGAGACATCAAATAAAGATTTGTCAGCATTGGCAAAGGCAGCTTTTGGATTGCTTAAATGGAGGGTCTTCTGGGAGCCCCACCTGCAGAAGGTTATATCTGTAATTCTCTCTTCAGCTGGTGATTCTAACTGGAGAACAAGATCTGCTACCTTGACATATCTTCGATCATTCATGCACAGGCACACGTACATTCTCAAAAGTTCAGAGAAACAACAAATATGGAGAACCGTTGAGAAGCTTCTAACTGACAACCAAGTGGAGATAAGAGAGCATGCTGCGACTGTTCTAGCAGGCCTTATGAGGGGTGGGGACGAAGATCTAGCTAAAGATTTCCGTGAGCGAGCATGCAGAGAAGCAAATGATCTCCAAGGAAAGAGAAGAAAAAGAAATTTAAGTTCGGGTCAGTCGCTAGCTACGGTTCATGGTGCCGTACTTGCTTTGGCAGCTTCTGTCTTGTCAGCTCCTTATGATATACCGGGTTGGCTGCCAGAGTGTGTTACGCTGCTTGCTCGGTTCAGTGTGGAGCCATCACCTGTGAAAGTTACTGTAACAAAAGCTATTGCAGAGTTTCGAAGGACTCATGCTGATACTTGGAACATTCAGAAAGATTTATTTAGTGAAGAGCAACTGGAGATTCTGGCAGATACATCCTCTTCATCATCATACTTTGCTTGA 5397 41.0 MHLYNAWLPPPVALETTKEKESFALVVNSLKDSYRPDDLDSVYSTLKWVSVIDLFIKAKSEVSLEDVAAIVDIGLELFHMSQDKLYAQVRWGNILVRILNKYSKRLSLKVQWRPLYNTLVHTHFTRNTGPEGWRLRQRHFEAITSLVRSCRRFFPAGSAADIWAEFRSMLDNPWHNSSFEGSGFVRLFLPTNLDNQDFFSHNWIEECMKYWDSIPNCQFWNSQWAAIIARVVKNYSFIDWECFLPTLFTRFLNMFEVPVANGSGSYPFSVDVPRNTRFLFSNKMGTPSKAIAKSIVYLLKPGSSAQLHLEKLVNLLEQYYHPSNGGRWTYVLDQFLLHLVFTFRKRLQAEQKADENNQNKLYLGPSERKSFVKTILKLIDRGQYSKNEYLADTVAAATSILSYVEPSLVLPFVAYRFVMALETMTATHQLKTAVMSVAFVGRPLFLTSLSASTVRSSDLVADDKFDDLLMISLSNALLGMDANDPPKTLATMQLIGSLFSNLASLNDNSDELSIIPMIRFSEWLDEFLCRLFSLLVDLEPSSVLNDGLLSSSASGTFLVDEGPYYYCMLEILLGRLSKPLFAQALKKISKFVKTNILPGAVAEVGLLCCACVHSDPEEAVAQLVAPVLSSAMSSMKTMPSTEFGGGGKSKEKTALSPALETAIDYHLKMLSVAVSFGGPALLPYKDQFKEAIACGFDSPSWKVNGAADHLLRSLLGSLILYYPIDQYMCTVRHPDVSALEEWISTKDYSNDESPLVIPKWHIPNDEEIQFANELLDLHFQSALDDLLKICESKTHADPGDEKDHLKVILLRIDSSLQGVLSCLPDFIPSVKNGKVGSSVHSFFIAGASGPSVGSTKLREKAAEIIHIACRYLLEKKADDNGLLMLIIRIMNALGNYGSLEYDEWSNHRHAWKLESAAIIEPPTNFIMSTCSKGKKRPRWALIDKAYMHSTWRSSQSSYHLYRVSGNFCPSEHVILLVDDLLQLSLHSYENVRVHAGKYLIKLLKRWPSMISKCVLSLSENLKNAESPEYAVLGSCTILATQPVLKHITVNSKSFSSFIFGILSSSHHESLKAQKAINELFVKFNIHFSGVSKSIFLTSEKQMDEMDFAALVYKLRSMSFHSTSLHWRYNLMANRVLLLLAMASRNNPSSSNILSETTGHFLMNLKSHLPQTRILAISALNTLLKESPYKVSVQEECDSPVEMQIDSKSSLEGALTQIFQEEGFFSETFNSLSHLHITDADAAASGGNHRNSSFQSHADKSITRFYFDFSASWPRTPSWISYIGSGTFYPNFARIFKRLIQECGVTVLLPLKSTLEEFANSSERSKQCVAAEALAGILHSDVNGLLEAWESWIMVQLQNIIMAQSVESTPDWAACIRYAVTGKGKHGTTVPFLRQQILECLVRPLTAAATTTIVAKRYAFLSASLVELSPSKMPSAEIHIHIRLLEELLGNMCHSSSQVREVIGVTLSVVCSNIRLLTSHPHDHSLEDVDVELKEERWAKLLIERTTQAVKNIQNSSHSFKLDTAQNGHSNVDSEDDVKWMETLFYFLLSLMKSGRSSQLLDVIVGLLYPVISLQETSNKDLSALAKAAFGLLKWRVFWEPHLQKVISVILSSAGDSNWRTRSATLTYLRSFMHRHTYILKSSEKQQIWRTVEKLLTDNQVEIREHAATVLAGLMRGGDEDLAKDFRERACREANDLQGKRRKRNLSSGQSLATVHGAVLALAASVLSAPYDIPGWLPECVTLLARFSVEPSPVKVTVTKAIAEFRRTHADTWNIQKDLFSEEQLEILADTSSSSSYFA* 1799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3363879 3381781 - CsaV3_3G003990.1 Csa03g00399 521304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00399 1798 Gene3D - 1527 1689 IPR011989 -
Csa03g00399 1798 PANTHER PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 1 1798 IPR035309 GO:0016504|GO:0070577|GO:0070628
Csa03g00399 1798 SUPERFAMILY ARM repeat 970 1770 IPR016024 -
Csa03g00399 1798 Pfam Domain of unknown function (DUF3437) 1713 1798 IPR021843 -
Csa03g00399 1798 Pfam Proteasome-substrate-size regulator, mid region 309 501 IPR032430 -
Csa03g00399 1798 Pfam Proteasome-substrate-size regulator, mid region 517 819 IPR032430 -
Csa03g00399 1798 PANTHER PROTEASOME ACTIVATOR COMPLEX SUBUNIT 4 1 1798 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00399 K06699 PSME4; proteasome activator subunit 4 - csv:101205528 3536.12
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g738 . . . . . Bpe08g01076 . . . . . . . . . . . . . . . . . . Cla10g00394 Cam10g0394 Cec10g0416 Cco10g0406 Clacu10g0401 Cmu10g1234 Cre10g0649 . . . Cone15ag1292 . Csa03g00399 . Cme06g02730 . . . . . . . . Sed08g2892 . . . Cma16g01004 . Car16g00958 Cpe14g00794 . Bhi11g00437 Tan01g1869 Cmetu06g2755 . Hepe06g0640 Mch10g1419 . . . . . . . . . . Chy06g01913 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010923 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00399 Csa_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0