Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00400 ATGGCTTCCACGACAGAGGAAACAACCATCACTTCCTACAGCGAAGACGACGACACCGTCATGGAACAACAACACTATGCTTATGCTATGGAACTGGCTACCTTAGCGGTGGTGCCGATGACACTCCAAGCAGCCTTTGAACTCGGCGTGTTTGAGATCTTGGCTAAGGCCGGGAACGGGGCCGAGCTCTCTTCGACAGAGATAGCGGCTAAAATAACCACAACAAACCCTGAAGCGTCGTTGATGATTGATAGAATATTGAGGCTTCTAGCAAGCCACGCTGTCGTGGGATGCTCTTTGGCTTCTGATGAAGATGGGAATGTGCAAAGACTTTATAGCCTTACGCCAGTTTCTAAGTATTATGTTCGTAACGAAGACGGTGTCTCTTTAGGTCCACTTTTAACACTGCTTCAAGATAAAGTCCTTCTGCATACATGGAGTGAACTGAAAAATACGGTTATTGAAGGAGGAAGTACTACTTTCACAAGGGCTTACGGGGGATTGAATGCCTTTCAATACCTTGGCACGGATTCAAGATTTAACCAAGTTTTTAACATTGCAATGATAAATCATTCCACTATGCCCATTAAAAAAATTGTCAAAGCCTACAAAGGCTTTGCAAACATCAAGCAACTAGTTGATGTTGGTGGTGGCCTTGGGATCACCCTTCAACTCATCACTTCTACGTACCCTTATATCAAAGGCATCAACTATGACTTACCTCACGTCATTCGCAATGCCCCTCCCTATCCAGGTGTGGAGCATGTGGGAGGAGACATGTTTGAGAAAATTCCAAATGGAGATGCTGTTTTCATGAAGTGGATACTACATGATTGGAGTGACGATCATTGCATAACGTTGTTGAAAAATTGCTACAATGCAATCCCAGATGATGGAAAGGTAATCGTAATGGACTCAATACTTCCAACATTACCCGAGACCACAAGTGCAACAAAAGCTGTTGCCCAATGTGATATGGTTGAGATGACTTTATATGAAGGAGGCAAAGAAAGAACTAGAGATGAATTCAAGGCCCTTGCAGCCAAAGCTGGCTTTAAACGTGTCATATTTCAATGTCTCGTGGCTAATCTTTGGGTTACTGAGTTTCTTAAAAATTGA 1119 43.34 MASTTEETTITSYSEDDDTVMEQQHYAYAMELATLAVVPMTLQAAFELGVFEILAKAGNGAELSSTEIAAKITTTNPEASLMIDRILRLLASHAVVGCSLASDEDGNVQRLYSLTPVSKYYVRNEDGVSLGPLLTLLQDKVLLHTWSELKNTVIEGGSTTFTRAYGGLNAFQYLGTDSRFNQVFNIAMINHSTMPIKKIVKAYKGFANIKQLVDVGGGLGITLQLITSTYPYIKGINYDLPHVIRNAPPYPGVEHVGGDMFEKIPNGDAVFMKWILHDWSDDHCITLLKNCYNAIPDDGKVIVMDSILPTLPETTSATKAVAQCDMVEMTLYEGGKERTRDEFKALAAKAGFKRVIFQCLVANLWVTEFLKN* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3396584 3400711 - CsaV3_3G004000.1 Csa03g00400 521305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00400 372 PIRSF O-mtase 6 371 IPR016461 GO:0008168
Csa03g00400 372 Pfam Dimerisation domain 40 91 IPR012967 GO:0046983
Csa03g00400 372 Gene3D Vaccinia Virus protein VP39 122 371 IPR029063 -
Csa03g00400 372 SUPERFAMILY Winged helix DNA-binding domain 23 124 IPR036390 -
Csa03g00400 372 PANTHER O-METHYLTRANSFERASE 24 370 IPR016461 GO:0008168
Csa03g00400 372 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE 24 370 - -
Csa03g00400 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 366 IPR029063 -
Csa03g00400 372 Gene3D - 6 121 IPR036388 -
Csa03g00400 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 371 IPR016461 GO:0008168
Csa03g00400 372 Pfam O-methyltransferase domain 146 353 IPR001077 GO:0008171
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00400 Csa-Chr3:3396584 Csa03g00402 Csa-Chr3:3428510 0 dispersed
Csa03g00400 Csa-Chr3:3396584 Csa03g00401 Csa-Chr3:3408135 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00400 K13066 - csv:101214675 726.472