Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00401 | ATGGCTTCCTCCGACAACGACACCGCCGTCGAACAGCAACAACATTATGCTTACGCAGGACACCTCGTTACCTTATCAGTCCTACCCATGACACTCCAAGCAGTGTTCGAGCTTGGTGTGTTCGAGATCTTGGCAAAGGCTGGGGATGGGGCCAACCTCTCTCCAGCAGAGATAGCGGCTGAGATAACCACTACAAACCCCAACGCAGCATTGATGCTTGATCGGATGTTGAGGCTTTTGGCATGCCACTCGGTGGTGGGATGCTCTATAGTTTCTGATAAAGATGGGAATGTGCAAAGGCTTTATAGCCTTACTCCGATTTCTAAATGTTATGTTCGAAATGAAGATGGTGTTTCGTTGGGTCCAATGTTATCATTGATTCAAGATAAAGTGTTTCTGCAAAGCTGGAGTGAGTTGAAGAATGCAGTAACTGAAGGAGGAGTTCCTTTTGACCGAGCTCATGGAGGAGTTAATGCATTTGAATACCCTAAGTTAGATCCAAGATTCAACCAAGTATTTAACATTGCAATGGTAAATCACACTACAATGTCCATAAAGAAAATTGTGGAATCATACAAAGGTTTTGCAAACATCAAGCAATTAGTTGATGTTGGTGGTGGCCTTGGGGTCACCCTTCAAATCATCACTTCTACCTATCCTTCCATCAAAGGCATCAATTTCGACTTACCTCATGTCATCCGTGATGCCCCTGCTTATAATGGGGTTCAACATGTGGGAGGAGACATGTTTGAGAGTGTTCCAAATGGAGATGCTATTTTCATGAAGTGGATACTACATGATTGGAGCGACGATCATTGCACAAAGTTATTGAAAAATTGCTATAATGCAATTCCAGATGATGGAAAGATAATCATAGTAGAGAGTGTGATTCCCACGAAGCCTGAAATCACCAATGTAACAAAGGCAACAACTCAAGGTGATGTGCTTATGATGACTCAAAATCCAGGAGGAAAGGAAAGAACTAGAGATGAATTTAAGAGCCTAGCAACCAAAGCTGGGTTTAAACATGTCATGTTCGAATGTTTTGTTGCTAATCTTTGGGTTATAGAGTTACTTAAAAATTAA | 1086 | 41.99 | MASSDNDTAVEQQQHYAYAGHLVTLSVLPMTLQAVFELGVFEILAKAGDGANLSPAEIAAEITTTNPNAALMLDRMLRLLACHSVVGCSIVSDKDGNVQRLYSLTPISKCYVRNEDGVSLGPMLSLIQDKVFLQSWSELKNAVTEGGVPFDRAHGGVNAFEYPKLDPRFNQVFNIAMVNHTTMSIKKIVESYKGFANIKQLVDVGGGLGVTLQIITSTYPSIKGINFDLPHVIRDAPAYNGVQHVGGDMFESVPNGDAIFMKWILHDWSDDHCTKLLKNCYNAIPDDGKIIIVESVIPTKPEITNVTKATTQGDVLMMTQNPGGKERTRDEFKSLATKAGFKHVMFECFVANLWVIELLKN* | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3408135 | 3412844 | - | CsaV3_3G004010.1 | Csa03g00401 | 521306 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00401 | 361 | Gene3D | - | 2 | 110 | IPR036388 | - | |
Csa03g00401 | 361 | PANTHER | CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE | 15 | 359 | - | - | |
Csa03g00401 | 361 | PANTHER | O-METHYLTRANSFERASE | 15 | 359 | IPR016461 | GO:0008168 | |
Csa03g00401 | 361 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 20 | 360 | IPR016461 | GO:0008168 | |
Csa03g00401 | 361 | Pfam | O-methyltransferase domain | 136 | 342 | IPR001077 | GO:0008171 | |
Csa03g00401 | 361 | PIRSF | O-mtase | 1 | 360 | IPR016461 | GO:0008168 | |
Csa03g00401 | 361 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 117 | 357 | IPR029063 | - | |
Csa03g00401 | 361 | Pfam | Dimerisation domain | 30 | 81 | IPR012967 | GO:0046983 | |
Csa03g00401 | 361 | Gene3D | Vaccinia Virus protein VP39 | 112 | 360 | IPR029063 | - | |
Csa03g00401 | 361 | SUPERFAMILY | Winged helix DNA-binding domain | 11 | 114 | IPR036390 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00401 | Csa-Chr3:3408135 | Csa03g00403 | Csa-Chr3:3438535 | 0 | dispersed | |
Csa03g00400 | Csa-Chr3:3396584 | Csa03g00401 | Csa-Chr3:3408135 | 0 | tandem | |
Csa03g00401 | Csa-Chr3:3408135 | Csa03g00402 | Csa-Chr3:3428510 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00401 | K13066 | - | csv:101214916 | 717.998 |