Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00401 ATGGCTTCCTCCGACAACGACACCGCCGTCGAACAGCAACAACATTATGCTTACGCAGGACACCTCGTTACCTTATCAGTCCTACCCATGACACTCCAAGCAGTGTTCGAGCTTGGTGTGTTCGAGATCTTGGCAAAGGCTGGGGATGGGGCCAACCTCTCTCCAGCAGAGATAGCGGCTGAGATAACCACTACAAACCCCAACGCAGCATTGATGCTTGATCGGATGTTGAGGCTTTTGGCATGCCACTCGGTGGTGGGATGCTCTATAGTTTCTGATAAAGATGGGAATGTGCAAAGGCTTTATAGCCTTACTCCGATTTCTAAATGTTATGTTCGAAATGAAGATGGTGTTTCGTTGGGTCCAATGTTATCATTGATTCAAGATAAAGTGTTTCTGCAAAGCTGGAGTGAGTTGAAGAATGCAGTAACTGAAGGAGGAGTTCCTTTTGACCGAGCTCATGGAGGAGTTAATGCATTTGAATACCCTAAGTTAGATCCAAGATTCAACCAAGTATTTAACATTGCAATGGTAAATCACACTACAATGTCCATAAAGAAAATTGTGGAATCATACAAAGGTTTTGCAAACATCAAGCAATTAGTTGATGTTGGTGGTGGCCTTGGGGTCACCCTTCAAATCATCACTTCTACCTATCCTTCCATCAAAGGCATCAATTTCGACTTACCTCATGTCATCCGTGATGCCCCTGCTTATAATGGGGTTCAACATGTGGGAGGAGACATGTTTGAGAGTGTTCCAAATGGAGATGCTATTTTCATGAAGTGGATACTACATGATTGGAGCGACGATCATTGCACAAAGTTATTGAAAAATTGCTATAATGCAATTCCAGATGATGGAAAGATAATCATAGTAGAGAGTGTGATTCCCACGAAGCCTGAAATCACCAATGTAACAAAGGCAACAACTCAAGGTGATGTGCTTATGATGACTCAAAATCCAGGAGGAAAGGAAAGAACTAGAGATGAATTTAAGAGCCTAGCAACCAAAGCTGGGTTTAAACATGTCATGTTCGAATGTTTTGTTGCTAATCTTTGGGTTATAGAGTTACTTAAAAATTAA 1086 41.99 MASSDNDTAVEQQQHYAYAGHLVTLSVLPMTLQAVFELGVFEILAKAGDGANLSPAEIAAEITTTNPNAALMLDRMLRLLACHSVVGCSIVSDKDGNVQRLYSLTPISKCYVRNEDGVSLGPMLSLIQDKVFLQSWSELKNAVTEGGVPFDRAHGGVNAFEYPKLDPRFNQVFNIAMVNHTTMSIKKIVESYKGFANIKQLVDVGGGLGVTLQIITSTYPSIKGINFDLPHVIRDAPAYNGVQHVGGDMFESVPNGDAIFMKWILHDWSDDHCTKLLKNCYNAIPDDGKIIIVESVIPTKPEITNVTKATTQGDVLMMTQNPGGKERTRDEFKSLATKAGFKHVMFECFVANLWVIELLKN* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3408135 3412844 - CsaV3_3G004010.1 Csa03g00401 521306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00401 361 Gene3D - 2 110 IPR036388 -
Csa03g00401 361 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE 15 359 - -
Csa03g00401 361 PANTHER O-METHYLTRANSFERASE 15 359 IPR016461 GO:0008168
Csa03g00401 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 360 IPR016461 GO:0008168
Csa03g00401 361 Pfam O-methyltransferase domain 136 342 IPR001077 GO:0008171
Csa03g00401 361 PIRSF O-mtase 1 360 IPR016461 GO:0008168
Csa03g00401 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 357 IPR029063 -
Csa03g00401 361 Pfam Dimerisation domain 30 81 IPR012967 GO:0046983
Csa03g00401 361 Gene3D Vaccinia Virus protein VP39 112 360 IPR029063 -
Csa03g00401 361 SUPERFAMILY Winged helix DNA-binding domain 11 114 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00401 Csa-Chr3:3408135 Csa03g00403 Csa-Chr3:3438535 0 dispersed
Csa03g00400 Csa-Chr3:3396584 Csa03g00401 Csa-Chr3:3408135 0 tandem
Csa03g00401 Csa-Chr3:3408135 Csa03g00402 Csa-Chr3:3428510 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00401 K13066 - csv:101214916 717.998