Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00402 ATGGCTTCCTCCGACAACAACACCGCCGTCGAACAGCAACAAAATTATGCTTACGCAGCACAGCTCGTTACCTTATCAGTCCTACCCATGACACTCCAAGCAGTGTTCGAGCTTGGTGTGTTCGAGATCTTGGCAAAGGCTGGGGATGGGGCCAACCTCTCTCCAGCAGAGATAGCGGCTGAGATAACCACGACAAACCCCGACGCAGCATTGATGCTTGATCGGATGTTGAGGCTTTTGGCGTGCCACTCGGTGGTGGGATGCTCTATAGCGTCTGATAAAGATGGGAATGTGCAAAGGCTTTATAGCCTTACTCCGATTTCTAAATATTATGTTCGAAATGAAGATGGTGTTTCGTTGGGTCCAACTTTATCGTTGATTCAAGATAAAGTGTTTCTGCAAAGCTGGAGTGAGTTGAAGAATGCAGTGATTGAAGGAGGAGTTCCTTTTGACCGAGCTCATGGAGGAGTTCATGCATTTGAATACCCTAAGTTAGATCCAAGATTCAACCAAGTATTTAACATTGCAATGATAAATCACACTACAGTGTCCATAAAGAAAATTGTGGAATCATACAAAGGTTTTGCAAACATCAAGCAATTAGTTGATGTTGGTGGTGGCCTTGGGGTCACCCTTCAAATCATCACTTCTACCTATCCTTCCATCAAAGGCATCAATTTCGACTTACCTCATGTCATCCGTGATGCCCTGCTTATAATGTTTACAAAGCTGAATTTTGATTATGAATTGGCAGGGGTTCAACATGTGGGAGGAGACATGTTTGAGAGTGTTCCAAATGGAGATGCTATTTTCATGAAGTGGATATTACATGATTGGAGCGACGATCATTGCACAAAGTTATTGAAAAATTGCTATAATGCAATTCCAGATGATGGAAAGATAATTATAGTAGACAGTGTGATTCCCATGGAGCCTGAAACCACAAATGTAACAAAGGCAACAGCCCAAGCTGATGTGCTTATGATGACTCAAAATCCAGGAGGAAAGGAAAGAACTAGAGATGAATTTAAGAGCCTAGCAACCAAAGCTGGGTTTAAACATGTCATATTCCAATGTTTTGTATCTAATCTTTGGGTTATAGAGTTTCTTAAAAATTAA 1119 41.73 MASSDNNTAVEQQQNYAYAAQLVTLSVLPMTLQAVFELGVFEILAKAGDGANLSPAEIAAEITTTNPDAALMLDRMLRLLACHSVVGCSIASDKDGNVQRLYSLTPISKYYVRNEDGVSLGPTLSLIQDKVFLQSWSELKNAVIEGGVPFDRAHGGVHAFEYPKLDPRFNQVFNIAMINHTTVSIKKIVESYKGFANIKQLVDVGGGLGVTLQIITSTYPSIKGINFDLPHVIRDALLIMFTKLNFDYELAGVQHVGGDMFESVPNGDAIFMKWILHDWSDDHCTKLLKNCYNAIPDDGKIIIVDSVIPMEPETTNVTKATAQADVLMMTQNPGGKERTRDEFKSLATKAGFKHVIFQCFVSNLWVIEFLKN* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3428510 3435918 + CsaV3_3G004020.1 Csa03g00402 521307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00402 372 Pfam O-methyltransferase domain 136 353 IPR001077 GO:0008171
Csa03g00402 372 Pfam Dimerisation domain 30 81 IPR012967 GO:0046983
Csa03g00402 372 PANTHER O-METHYLTRANSFERASE 13 371 IPR016461 GO:0008168
Csa03g00402 372 SUPERFAMILY Winged helix DNA-binding domain 11 114 IPR036390 -
Csa03g00402 372 Gene3D Vaccinia Virus protein VP39 112 371 IPR029063 -
Csa03g00402 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 371 IPR016461 GO:0008168
Csa03g00402 372 PIRSF O-mtase 1 371 IPR016461 GO:0008168
Csa03g00402 372 Gene3D - 2 111 IPR036388 -
Csa03g00402 372 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 13 371 - -
Csa03g00402 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 369 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00400 Csa-Chr3:3396584 Csa03g00402 Csa-Chr3:3428510 0 dispersed
Csa03g00402 Csa-Chr3:3428510 Csa04g00859 Csa-Chr4:6091411 3.64E-142 dispersed
Csa03g00401 Csa-Chr3:3408135 Csa03g00402 Csa-Chr3:3428510 0 tandem
Csa03g00402 Csa-Chr3:3428510 Csa03g00403 Csa-Chr3:3438535 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00402 K13066 - csv:101214916 654.825