Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00403 ATGGGTTCCAATATGGGGGAGCAAACATCTGACGTAGTCACCGACGATGAACAACAAAATTACGCTTATGCTGGACAACTGATTACCTTAACGGTGCTACCGATGACGCTTCAAGCAGTGTTTGAGCTAGACGTGTTTGATATCATAGCGAAGGCCGGGGATGGGGCCGAGCTCTCCGCCACACAGATAGCCAATGAGATAACACATAAAAATCCGGACGCAGTGTCGATGATTGATCGAATGCTGAGGCTTCTTGCGAGCCACTCGGTTGTGGGATGCTCTGTGGGGTTTGATGAAGATGGAAAAATGCAAAGACTTTACAGCCTTAATCCAATTTCTAAGTATTATGTTCGTAATAAAGATGGGGTATCTGATGCTTTTAACTTATCATTCATTCAAGATAAAGTCTTCCTCCACAGCTGGAGTGAGCTAAAGAACGCGGTTATGGAAGGAGGGGTTCCTTTCAAGAGGGCTCATGGAGTATATTGTTTTGAATATTGTGGATTGGATCCAAGATTTAACCAAATTTTAAACGCTGCAATGAAAAATCACTCTACGAAATTCATCAACGAAATTGTCAAATCTTACAAAGGATTTGCAAACATCAAGCAACTAGTTGATGTTGGTGGTGGCCTTGGTGTATGTCTCCAAATCATCACTTCTACGTACCCTTCAATCAAAGGTATCAATTTCGACTTGCCACATGTCCTTCAGAATGCCCCATCTTATCCCGGGGTAGAACATGTGGAAGGAGACATGTTTGAGCATGTTCCAAAGGGAGATGCTATTTTCATGAAGTGGATACTACATGATTGGAATGATGATAAATGTGTGAAGCTATTGAAAAATTGCTACGATGCAATTCCAAATGATGGAAAGGTAATAGTAGTTGATGCAGTTCATACAATGGTGCCTGAAACCACATGTGCAGCAAGAGTTGTTGCTCAAGGTGATGTGTTTATGATGACTCAAAATCGAGGAGGAAAAGAGAGAAGTAGGGATGAATTCAAGGCCCTAGCAACCAAAGCTGGTTTTGAACATATTAATTTTCACTCTTGTGTATATAATCTTTGGGTTATAGAGCTTTTTAAAATCTCCCAACTAGAAGGTTGA 1113 41.15 MGSNMGEQTSDVVTDDEQQNYAYAGQLITLTVLPMTLQAVFELDVFDIIAKAGDGAELSATQIANEITHKNPDAVSMIDRMLRLLASHSVVGCSVGFDEDGKMQRLYSLNPISKYYVRNKDGVSDAFNLSFIQDKVFLHSWSELKNAVMEGGVPFKRAHGVYCFEYCGLDPRFNQILNAAMKNHSTKFINEIVKSYKGFANIKQLVDVGGGLGVCLQIITSTYPSIKGINFDLPHVLQNAPSYPGVEHVEGDMFEHVPKGDAIFMKWILHDWNDDKCVKLLKNCYDAIPNDGKVIVVDAVHTMVPETTCAARVVAQGDVFMMTQNRGGKERSRDEFKALATKAGFEHINFHSCVYNLWVIELFKISQLEG* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3438535 3441998 + CsaV3_3G004030.1 Csa03g00403 521308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00403 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 361 IPR029063 -
Csa03g00403 370 PANTHER O-METHYLTRANSFERASE 14 364 IPR016461 GO:0008168
Csa03g00403 370 PIRSF O-mtase 1 364 IPR016461 GO:0008168
Csa03g00403 370 Gene3D Vaccinia Virus protein VP39 117 364 IPR029063 -
Csa03g00403 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 364 IPR016461 GO:0008168
Csa03g00403 370 SUPERFAMILY Winged helix DNA-binding domain 15 119 IPR036390 -
Csa03g00403 370 Pfam O-methyltransferase domain 141 346 IPR001077 GO:0008171
Csa03g00403 370 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 14 364 - -
Csa03g00403 370 Pfam Dimerisation domain 35 86 IPR012967 GO:0046983
Csa03g00403 370 Gene3D - 3 116 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00401 Csa-Chr3:3408135 Csa03g00403 Csa-Chr3:3438535 0 dispersed
Csa03g00403 Csa-Chr3:3438535 Csa04g00859 Csa-Chr4:6091411 1.70E-140 dispersed
Csa03g00402 Csa-Chr3:3428510 Csa03g00403 Csa-Chr3:3438535 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00403 K13066 - csv:101205290 588.186