Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00408 ATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACAATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCAAACTCCGCCGCAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGCGCGGGTGGGAGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTCGGCCCAGGTAG 555 56.22 MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTTGRPR* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3477057 3478347 + CsaV3_3G004080.1 Csa03g00408 521313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00408 184 MobiDBLite consensus disorder prediction 1 24 - -
Csa03g00408 184 Gene3D Histone, subunit A 11 135 IPR009072 GO:0046982
Csa03g00408 184 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Csa03g00408 184 SUPERFAMILY Histone-fold 22 124 IPR009072 GO:0046982
Csa03g00408 184 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Csa03g00408 184 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Csa03g00408 184 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Csa03g00408 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Csa03g00408 184 MobiDBLite consensus disorder prediction 153 184 - -
Csa03g00408 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Csa03g00408 184 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00408 Csa-Chr3:3477057 Csa03g03243 Csa-Chr3:29752680 1.28E-57 dispersed
Csa06g02453 Csa-Chr6:21868898 Csa03g00408 Csa-Chr3:3477057 6.19E-09 dispersed
Csa03g00408 Csa-Chr3:3477057 Csa06g00967 Csa-Chr6:7816316 1.94E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31103 PF00808 CBFD_NFYB_HMF 2.00E-27 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00408 K08065 - csv:101204640 304.293