Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00408 | ATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACAATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCAAACTCCGCCGCAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGCGCGGGTGGGAGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTCGGCCCAGGTAG | 555 | 56.22 | MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTTGRPR* | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3477057 | 3478347 | + | CsaV3_3G004080.1 | Csa03g00408 | 521313 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00408 | 184 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Csa03g00408 | 184 | Gene3D | Histone, subunit A | 11 | 135 | IPR009072 | GO:0046982 | |
Csa03g00408 | 184 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 55 | 71 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Csa03g00408 | 184 | SUPERFAMILY | Histone-fold | 22 | 124 | IPR009072 | GO:0046982 | |
Csa03g00408 | 184 | PRINTS | CCAAT-binding transcription factor subunit A signature | 52 | 70 | - | - | |
Csa03g00408 | 184 | PRINTS | CCAAT-binding transcription factor subunit A signature | 71 | 89 | - | - | |
Csa03g00408 | 184 | PRINTS | CCAAT-binding transcription factor subunit A signature | 90 | 108 | - | - | |
Csa03g00408 | 184 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 157 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Csa03g00408 | 184 | MobiDBLite | consensus disorder prediction | 153 | 184 | - | - | |
Csa03g00408 | 184 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 24 | 88 | IPR003958 | - | |
Csa03g00408 | 184 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 | 1 | 157 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00408 | Csa-Chr3:3477057 | Csa03g03243 | Csa-Chr3:29752680 | 1.28E-57 | dispersed | |
Csa06g02453 | Csa-Chr6:21868898 | Csa03g00408 | Csa-Chr3:3477057 | 6.19E-09 | dispersed | |
Csa03g00408 | Csa-Chr3:3477057 | Csa06g00967 | Csa-Chr6:7816316 | 1.94E-63 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31103 | PF00808 | CBFD_NFYB_HMF | 2.00E-27 | CL0012 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00408 | K08065 | - | csv:101204640 | 304.293 |