Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00413 ATGGGGTTTCTTGATTCTCTGTTTGGAAAAGATTCAAGAAAGTTTATCAAAAGAAAAGATAGCGATGCTGGTGAAGCAGGCCGAGCGCTCGAAGAAATCAGAGGTTCGCTTTATAATGAACTACGAACTTCCGATGGGGCGAAACGGCAACAGCAGCGATATTGCGGACCTGTAGTGGCAATGACATTCAATTTCATGGTTGCTGTTGGAATTATAATGGCAAACAAATTAGTAATGGGAAGAGTTGGATTTAACTTTCCAATATTTCTCACATTAATACATTACACTATTGCATGGTTTTTACTAGCAATTTTCAAGGCACTTTCTTTGCTTCCTGTTTCTCCTCCTACCAAAACCACTCCCTTCTCTTCTCTTTTCTCCTTAGGTGTTGTCATGGCTTTTGCTTCAGGTCTTGCCAATACAAGTCTAAAGCATAACAGTGTTGGATTCTACCAGATGGCTAAAATTGCAGTAACTCCCACAATTGTTTTTTCAGAGTTCATACTCTTCAAGAAAACCATTTCTTTCAAAAAGGTATTGGCTTTGTCTGTCGTCTCCATCGGTGTTGCGATTGCAACCGTAACAGATTTAGAGTTCAACCTATTTGGTGCCTTGATCGCAATTGCTTGGATAATCCCAAGTGCCATAAACAAAATACTTTGGTCGAATCTGCAACAACAAGCGAGTTGGACGGCATTAGCGTTGATGTGGAAAACTACACCAATTACAATATTTTTCTTACTTGCTCTCATGCCTTGGCTGGATCCACCAGGAGTTTTATCTTTTAAATGGGATCTTGGTAGTTCAACTGCTATTTTGATATCAGCTCTTCTTGGTTTTCTCTTGCAATGGTCTGGAGCTTTGGCGCTTGGTGCAACCTCTGCAACATCTCATGTTGTTTTGGGACAGTTCAAGACTTGTGTAATTCTGCTTGGAAGCTATTTTGTTTTTGGGTCCGATCCCGGGTTCGTCAGCATTTGCGGAGCGGTTACAGCACTCGGTGGAATGTCTGCTTACACATCCCTTAACCTGCAGCAACAACTTGACAACAAGCAACAACTTCCAAAGCATAACTTGGCGATACCGAAACCTGAAAACAACGTGGTTGTAGAAGATGCTCCGAAGTCAGATGTACAAAATTCTGATGTTGCTGTATAG 1158 41.36 MGFLDSLFGKDSRKFIKRKDSDAGEAGRALEEIRGSLYNELRTSDGAKRQQQRYCGPVVAMTFNFMVAVGIIMANKLVMGRVGFNFPIFLTLIHYTIAWFLLAIFKALSLLPVSPPTKTTPFSSLFSLGVVMAFASGLANTSLKHNSVGFYQMAKIAVTPTIVFSEFILFKKTISFKKVLALSVVSIGVAIATVTDLEFNLFGALIAIAWIIPSAINKILWSNLQQQASWTALALMWKTTPITIFFLLALMPWLDPPGVLSFKWDLGSSTAILISALLGFLLQWSGALALGATSATSHVVLGQFKTCVILLGSYFVFGSDPGFVSICGAVTALGGMSAYTSLNLQQQLDNKQQLPKHNLAIPKPENNVVVEDAPKSDVQNSDVAV* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3496805 3500437 + CsaV3_3G004130.1 Csa03g00413 521318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00413 385 Pfam Triose-phosphate Transporter family 62 339 IPR004853 -
Csa03g00413 385 PANTHER OS06G0297600 PROTEIN 16 362 - -
Csa03g00413 385 PANTHER SOLUTE CARRIER FAMILY 35 16 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00413 - - - csv:101203997 740.725
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02194 Csa-Chr1:19035552 Csa03g00413 Csa-Chr3:3496805 3.91E-176 dispersed
Csa03g00413 Csa-Chr3:3496805 Csa06g01199 Csa-Chr6:10167626 3.28E-36 dispersed
Csa03g00413 Csa-Chr3:3496805 Csa02g02381 Csa-Chr2:21137816 4.21E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g708 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00413 . Cme06g02761 . Blo10g00874 . . . . . . . . . . . . . Cpe14g00778 . Bhi11g00458 . . . . . . . . . . . . . . . Chy06g01899 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001987 2 5 2 0 1 2 3 2 2 2 2 2 3 2 2 2 2 3 3 2 2 2 2 2 1 2 1 4 4 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00413 Csa_Chr03 FPKM 2.051913 1.902356 6.444083 5.73453 13.358928 12.191074 13.988527 3.278208 4.335514 4.454376