Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00417 ATGGGTGTGAAGGGCCATCAAATTGCGACTCATCATTCACCTAATGCCAAAGTAGAAGTAGGAGAGATTGACACTAGTGCACCTTTCCAGTCTGTTAAAGATGCAGTCAACTTGTTTGGTGAAGGTGCTTTTTCGGGAGAACGACTAATTGTGAGGAAGGCGAAACAACCTCACTCTGCAGAGAAAGTGTTTGCAAAAGAGACTCAACTCCACTTGGCTGAAAAGGAACTGAGCAAACTAAAGGATCAGCTAAAGAATGCTGAAACTACCAAATCTGAAGCGCTTGTTGAGCTTGAAAGTACTAAAAGAGCTGTTGATGACCTAACCAAGAAGCTGCAATTGCTGAGGGAATCAAAAGAATCAGCCATCAAGGATTCGGAGGTTGCAAAGGCTCGAGCAAAGCAGTTTGAGGAGGCAAATGGAAGTAATCACTCTGGAAATGATTATGGTTGGAAACAAGACTTGGAAACTACACGAGATCAGTACATGGTAGTGATCGGAGAACTAGATGCTGCAAAGCAAGAATTGAGGAAAATTCGTCAAGATTCTGATGCATCTTTGGAAGCGAAAGTAGCTGCATTGAAACAGGTGTCGGAGGCTGAGGAATCAGTCAAAACACACAAGCTGAAAGCAAATGAACTTTCTAAGGAAATCTTGGCTGCACGGGAATCCATTGAAAAGCTCAAGCTGGCATCCCTACAAGCACATAAAGAGCAAGAAAAGATATTTGTGGAGAAAGACATCCAGAGGCAGTCTTATAAAGCGGCTCTTGAGGAGTCCGCAAAAAAACTGTTTTCTTTGCAGAAGGAAATTGACCCTGATCTCACCAGGAATCTCGAATTGCAGTTGAACGAGACAATGAATGAAATTGGGAAACTGCAGAAACAAATGGAAGATAAAAAAGCGTTGGATATAGATTCAGTGAAGAATGTCACCTCAGAGCTTGATGATGCAAAAGAGTCCCTACAAAAAGCAGCTGAAGAAGAAAGATCTCTCCGTAACCTGGTTGAAGCTCTTAAGTTGGAACTGGAAAATGTGAGGAAAGAGCATTCTGAACTCAAGGAAAAAGAAGCTGAAGCAGAATCTACTGCTGGGAATTTGCATGTCAAGCTCCGGAAGACCAAATCTGAACTCGAAGCATACCTCACAGAAGAATCTAAAGCAAGAGGTGCTTGTGAAGATATGCTCTCAACTCTTAACCAACTGTCATCAGAAACTGAAAATGCTAGACAGGGAGCAGAAGAGATGACAAATAAAGCAGAGGATTTGAGGAAGGAAGCAGAAGGCACCAGAATAGCATTGGAAGATGCTGAGAAGCAGCTAAGAGTTGCACTAGATGAAGCTGAAGAAGCCAAAGCAGCTGAAGCTAGGGCCCTTGATCAGATTAAAGTACTATCTGAAAGAACCAATGCTGCACGAGCTTCGACATCTGAGTCGGGGGCTAACATCACTATCTCCAGGGAAGAGTTTGAATCCCTAAGCCGTAAAGTTGAGGAGTCTGACACATTAGCAGAAATGAAAGTAGCTGCTGCATTAGCTCAAGTTGAAGCTGTGAAGGCTGGTGAAAATGAAATTCTAAAAAAGCTAGAAGCATCCCAGAAGGAAATTGAGGATATGCAGACTGCAACTGAGGAAGCTTCAAAGAAAGCCAAAATGGCAGAAGCAGCTAAGAAAGCTGTGGAAGGAGAACTAAGAAGATGGCGTGAGCGAGAGCAGAAAAAAGCGGTTGAAGCAGCATCAAGAATTTTGGCTGAAACAGAGGTGTCTTTGGAATCATCTCCAAGCCACAATAGGATTCAAAAGCAGAGCACAACAGTGAAAAGAGTTGAGTCCAAAAAATTGGAGAAAGATAAAACCTTCTCAAAGAAGGTACTTCTACCAAACCTTAGCGGCTTATTTGTTAGGAAAAAGAACCAGGTTGATGGTGGATCGCCCTCCTACTTGCCTGGTGAGAAATCTGCGTGA 1965 42.95 MGVKGHQIATHHSPNAKVEVGEIDTSAPFQSVKDAVNLFGEGAFSGERLIVRKAKQPHSAEKVFAKETQLHLAEKELSKLKDQLKNAETTKSEALVELESTKRAVDDLTKKLQLLRESKESAIKDSEVAKARAKQFEEANGSNHSGNDYGWKQDLETTRDQYMVVIGELDAAKQELRKIRQDSDASLEAKVAALKQVSEAEESVKTHKLKANELSKEILAARESIEKLKLASLQAHKEQEKIFVEKDIQRQSYKAALEESAKKLFSLQKEIDPDLTRNLELQLNETMNEIGKLQKQMEDKKALDIDSVKNVTSELDDAKESLQKAAEEERSLRNLVEALKLELENVRKEHSELKEKEAEAESTAGNLHVKLRKTKSELEAYLTEESKARGACEDMLSTLNQLSSETENARQGAEEMTNKAEDLRKEAEGTRIALEDAEKQLRVALDEAEEAKAAEARALDQIKVLSERTNAARASTSESGANITISREEFESLSRKVEESDTLAEMKVAAALAQVEAVKAGENEILKKLEASQKEIEDMQTATEEASKKAKMAEAAKKAVEGELRRWREREQKKAVEAASRILAETEVSLESSPSHNRIQKQSTTVKRVESKKLEKDKTFSKKVLLPNLSGLFVRKKNQVDGGSPSYLPGEKSA* 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3535173 3538898 - CsaV3_3G004170.1 Csa03g00417 521322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00417 654 Coils Coil 308 363 - -
Csa03g00417 654 Coils Coil 522 570 - -
Csa03g00417 654 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 16 642 - -
Csa03g00417 654 MobiDBLite consensus disorder prediction 587 610 - -
Csa03g00417 654 Coils Coil 197 231 - -
Csa03g00417 654 MobiDBLite consensus disorder prediction 403 425 - -
Csa03g00417 654 MobiDBLite consensus disorder prediction 587 602 - -
Csa03g00417 654 Coils Coil 63 125 - -
Csa03g00417 654 Pfam Weak chloroplast movement under blue light 22 573 IPR008545 -
Csa03g00417 654 MobiDBLite consensus disorder prediction 1 22 - -
Csa03g00417 654 Coils Coil 399 468 - -
Csa03g00417 654 Coils Coil 276 303 - -
Csa03g00417 654 Coils Coil 169 189 - -
Csa03g00417 654 PANTHER BNAC03G14000D PROTEIN 16 642 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00417 - - - csv:101202792 1176.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01536 Csa-Chr1:10977402 Csa03g00417 Csa-Chr3:3535173 2.85E-114 dispersed
Csa02g02566 Csa-Chr2:22448824 Csa03g00417 Csa-Chr3:3535173 9.22E-29 dispersed
Csa03g00417 Csa-Chr3:3535173 Csa04g01678 Csa-Chr4:16130244 1.70E-08 dispersed
Csa03g00417 Csa-Chr3:3535173 Csa04g02403 Csa-Chr4:24293599 2.43E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g687 . . . . Bpe09g00119 . . . . Cmo06g00678 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1256 Cone15ag1278 . Csa03g00417 . . . Blo10g00872 . Bda12g00972 . . . . . . . . . . . Cpe14g00781 . Bhi11g00468 . . . . . . . . . . . . . . . Chy06g01895 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005145 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 6 2 1 1 1 1 1 1 1 0 4 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00417 Csa_Chr03 FPKM 7.908291 8.797482 17.206018 16.677189 9.194599 7.827201 8.640265 36.708652 33.395367 34.91151