Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00419 ATGTCGGAGAAGGGTCAGCCATTGCCGAAGTTCGGTGAATGGGATGTTAATAATCCTGCTTCTGCAGAGGGCTTCACTGTGATATTTAATAAGGCAAGAGATGAGAAGAAAACCGGTGGCCAACCTGAATCACCTGGAAAGGCACCTCGGGCTAAAAATGTAGCAGATCCTGGCAAGCCTCAGGCTAAGAAATGGTTCTGCTGCATTCAGAGCCCGCCTACACAATCTTGA 231 48.48 MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKPQAKKWFCCIQSPPTQS* 77
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3541208 3544719 - CsaV3_3G004190.1 Csa03g00419 521324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00419 76 PANTHER RPM1-INTERACTING PROTEIN 4-LIKE 1 72 - -
Csa03g00419 76 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 72 IPR040387 -
Csa03g00419 76 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Csa03g00419 76 MobiDBLite consensus disorder prediction 30 63 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00419 - - - csv:101203753 166.392
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00922 Csa-Chr1:5759957 Csa03g00419 Csa-Chr3:3541208 1.96E-21 dispersed
Csa03g00419 Csa-Chr3:3541208 Csa03g02544 Csa-Chr3:23821887 9.52E-23 dispersed
Csa07g00849 Csa-Chr7:6273582 Csa03g00419 Csa-Chr3:3541208 2.13E-26 transposed
Csa03g00419 Csa-Chr3:3541208 Csa06g00971 Csa-Chr6:7856811 1.18E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g682 . . . . . . . . . . . . . . Sed07g2758 . . Bhi09g01783 Tan01g3200 Cmetu06g0507 . . . . . . . . . . . . . . Cone15ag1275 . Csa03g00419 . . . . . . . . . . . . . . . . . . . Bhi11g00469 . . . . . . . . . . . . . . . Chy01g01137 Cme01g00893
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000283 4 7 1 2 4 5 8 5 5 5 5 5 8 3 5 7 1 5 8 0 5 5 5 1 5 5 4 9 5 4 141
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00419 Csa_Chr03 FPKM 17.617155 22.343899 1.931055 2.003376 0.378559 0.0 0.453186 0.80514 1.045215 0.947668