Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00422 ATGAATCCATCTCACCCTCTTTGGGCCCTTCAGCGGCGGCTTTTCTGCTTCATCAGAACTACAAACTACTCCTCCGCCGCCGTTACTGCTCCGTCCACCGCCTCAAACTCCAGTTTTCCCCTCAAGAACGTGACCAAGTCGAACTTCGAAGCTGCACTATCGGAACTTCGAAGCCATGTCCGAGCTGCGGACTTCGTTGCCATCGACCTCGAAATGACCGGCATCACCAGCGCCCCTTGGCGCGACTTGTTGGAGTTCGATCGCTTTGATGTTCGTTACCTCAACGTCAAGGACTCTGCTGAGAAGTTCGCCGTTCTTCAATTCGGCATCTGCCCGTTCCGCTGGGACTCCGCCAAAAATTCATTCGTCGCTCACCCGCACAACTTTTTTATTTTCCCACGCCATGAAATTGAAGTCGATGGCCCTTCTTCCGAGTTCCTCTGCCAGACAACCTCCATGGAATTCTTAGCTAAATACCAATTTGATTTCAACGCTTGTATATATGAAGGAATATCTTATTTGTCCAGAGCACATGAAGATGCAGCACGTAAACGTTTGAATTTTGCATATGGGGATGAAATGTTGGATGCATCTTCTAATGTGACTAATGTTATGGATAAGAAGAGGGTCGGCATTCCTGATGTCTTATTCAAGGAAAGAATGAAAAACAGATTACATGAATGGCGGGACAGATTACTATCTGAAAGAAATATGGAGTTTCAAGGCCAAGAAGGCTCAAATGATCACAAACGACAATTTCAAACCATTTTCTTCAAGATGCGACCTGCTCTTACTTTGAGTGATTTCACCTCTCATCAGATCAAATTGATTCAGCTGGTAATTAAGAAGCATTTTGAGGATCTTTGTTTTGTTGTCGTGAATGATGGTAATGCAGATCTACAACAGTTAGTCGTGTTTGTGGATTCTAGAGACGATAAAGAGCTGCTCATGCAAGAGGTAAACCGTGACCAGAAGGAAGTAAATGAAATGAAGATACAATCTGCAATTGGGTTTCGTCATGTTATTGATCTTCTTTCATCGGAAAAGAAGCTAATTGTTGGTCATAATTGTTTCCTTGATATGCTTCACATACACAGAAAATTTATTGGCTCACTTCCTTCAACCACTGAAGAATTTGTCTCTTCTTTGGGAAAACACTTTCCGTACATCATGGATACCAAAATTCTCTTAAATGGCAATAACATTCTTATACGACGGATGAATAAGTCCAACACATCTCTATCCTCCGCCTTTGGCTTATTATGCCCGCATATTGCCTTCAGCTCTCAGAGGGTTAGTGCCTGGAACTCTGGTGTGCAAGTGGAGGTTCAAGTAGATGATCTAAGATCCTCCAAATGGAACTCCGGAGATACACATGAAGCTGGGTACGATGCTTTTATGACAGGATGTGTATTTGCTCAAGCATGTGATCTTATGGGAATTGATTTTGTAGATCGTTCAACTTCCGAAAATTTGCTTGGCAATGAGATATTGCAAAAGCACATCAATCGTCTGTATTTGAGTTGGGCCAGAGGAGATATTATTGATCTAAGCACTGGTAACCAAGTGACTGAGTCTTTCACGACTAGAAAGCATAGAGCGAAAGTATCTTTTCAGAACATTGTTCTAATCTGGGGATTTCCCACCAACCTTACTGCAAGAAAGATCAAAGCTTGCATCTCTAAAGCTTTCGGCCAGACCAATGTCTCTAGTGTCAACCATTTAGATGAAAGTGCTGTGTTTGTGCAGTTTACAAAGCCAGAAATGGTTTCCGAATTTCTCGACTTAAAGGAGAAGCTGGAGAAGCGTGATGATCCATTATCAGTTTTGCATCCTCTCACTGAACTTTTCGATGTTAGGACCACTCATGCTGCAGGCTACGAAGCATACAAGAAAATTTGCAGCTCTCCCATGTCCAAACACTTGTTTTCTGATCAGGCAGAGGCAGTTGGGATTAACCGAAAGACGACATCGATAAAATCTGAGGAAAAAAGGAGCCGGATGCACCAAGCTGTTGAAACTACTGAAATACAGGGAACGGAGGTGGAAGCAAATGATCTAAGCAACACTAACTACCACAGTTTACGATCTTCTTCAATGTAA 2103 42.8 MNPSHPLWALQRRLFCFIRTTNYSSAAVTAPSTASNSSFPLKNVTKSNFEAALSELRSHVRAADFVAIDLEMTGITSAPWRDLLEFDRFDVRYLNVKDSAEKFAVLQFGICPFRWDSAKNSFVAHPHNFFIFPRHEIEVDGPSSEFLCQTTSMEFLAKYQFDFNACIYEGISYLSRAHEDAARKRLNFAYGDEMLDASSNVTNVMDKKRVGIPDVLFKERMKNRLHEWRDRLLSERNMEFQGQEGSNDHKRQFQTIFFKMRPALTLSDFTSHQIKLIQLVIKKHFEDLCFVVVNDGNADLQQLVVFVDSRDDKELLMQEVNRDQKEVNEMKIQSAIGFRHVIDLLSSEKKLIVGHNCFLDMLHIHRKFIGSLPSTTEEFVSSLGKHFPYIMDTKILLNGNNILIRRMNKSNTSLSSAFGLLCPHIAFSSQRVSAWNSGVQVEVQVDDLRSSKWNSGDTHEAGYDAFMTGCVFAQACDLMGIDFVDRSTSENLLGNEILQKHINRLYLSWARGDIIDLSTGNQVTESFTTRKHRAKVSFQNIVLIWGFPTNLTARKIKACISKAFGQTNVSSVNHLDESAVFVQFTKPEMVSEFLDLKEKLEKRDDPLSVLHPLTELFDVRTTHAAGYEAYKKICSSPMSKHLFSDQAEAVGINRKTTSIKSEEKRSRMHQAVETTEIQGTEVEANDLSNTNYHSLRSSSM* 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3584298 3590719 + CsaV3_3G004220.1 Csa03g00422 521327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00422 700 SUPERFAMILY Ribonuclease H-like 41 487 IPR012337 -
Csa03g00422 700 Coils Coil 218 238 - -
Csa03g00422 700 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 39 655 - -
Csa03g00422 700 Coils Coil 313 333 - -
Csa03g00422 700 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 39 655 - -
Csa03g00422 700 Gene3D - 43 212 IPR036397 GO:0003676
Csa03g00422 700 Gene3D - 295 521 IPR036397 GO:0003676
Csa03g00422 700 Pfam CAF1 family ribonuclease 44 472 IPR006941 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00422 K01148 PARN, PNLDC1; poly(A)-specific ribonuclease [EC:3.1.13.4] - csv:101222826 1395.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00422 Csa-Chr3:3584298 Csa07g01624 Csa-Chr7:16762405 3.49E-70 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g677 . . . . Bpe09g00121 . . Bma13g01121 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1229 Cone15ag1253 . Csa03g00422 . Cme06g02768 . . . Bda12g00970 . . . . . . . . . . . Cpe14g00784 . Bhi11g00474 . . . . . . . . . . . . . . . Chy06g01891 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009803 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00422 Csa_Chr03 FPKM 6.229072 7.258956 46.621597 46.688862 31.83148 30.998665 32.526703 3.397773 3.981629 4.077608