Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00423 ATGACTCCCAAAATTATCCTTCCTCTCACTCTTTTTCTCCTTATCTTCACTACCCCAAGAACAGAGTGTATCGGCTTCGATTTTACTTCTTTCAATATCAGAAACCTGACTCTCCTTGGCGATTCCCATCTCCGAGATGGCGTCATTGGTCTCACTAAAGAGCTCGGAGTTCCTTCTTCAAGCGCCGGCACCGTAATTTACAACAAACCCATCGGATTTTACGACGCCGATGCTAACTTTACTGCTTCTTTCTCTACAAGATTCTCTTTCTCCATCACCAACATCAACCCCACTTCCTCCGGAGACGGTCTATCCTTTTTCCTCTCCCCCGATAATCAGACTCTCGGCAGCCCAGGCGGGTATTTGGGTCTCGTCAATTCTTCCCAATTGACCAAGAACAAGTTTCTCGCCGTTGAATTTGATACACGGCTTGATTCTGTCTTTAAGGATCCGAATGCTCATCATGTTGGCTTCGACATTGAGAGCTTGATTTCGATCAAGACAGCTAATCCTGCTAGTCAAGGTGTTAATCTCAAGAGTGGGAAGTCGATTACGGCTTGGATTGAGTACAAGAATGAGGAATGTAGGTTGAGGGTTTTCTTGAGTAATTCTAGTTTGAAACCTTCTAAGGCGCTTCTTGACGTCGGTATCGATCTTTCGAGCTATCTTAAGGAGGTTATGTTTGTTGGGTTTTCGGGGTCGACTGAAGGGAGTACTGAGCTTCATTTGATTGAGAATTGGACTTTTAATACTTCTGGGTTCGTTTCTGCTAGGCCTAGATTTAACCCTCATAATGTTTCTGATAGCTCTGTGATTGTTTCTCCTAATATTTCTTTATCTGATTCTGGCAACGGTCGTCACAGTAGGCTCGGATTAGGTCTTGGGATCGCCGGACCGGCTTTTTTTTGTGCTGTGATTGCTGTTTTTGGTTTCTTTTCACTTATGAAATGGAGGAGGATTAGGACTCAGAAAAGCATCAAGGCAGAGCTTTTGACAGGTCCTAGAGAGTTTAGTTACAAAGAACTAAAGACAGCCACAAAAGGATTTCATTCAAGTAGGATCATTGGCAATGGGGCTTTTGGGACTGTCTATAAAGCTTTTTGCATCTCATCCGGAAACATTTCTGCGGTTAAAAGATCGAAGCATTCCCACGAAGGGAAGACCGAGTTCCTTGCCGAGTTGTCGATCATAGCTCGGTTGAGGCACAAGAATTTGGTTCAGCTCCAAGGTTGGTGTGTTGAGAAAGGTGAACTGCTTCTTGTTTACGACTTTATGCCGAACGGGAGCCTCGATAAGCTGCTTTACCAGGAATCTAGTGAAGCTAGCTTGTTAAACTGGTCTCACAGGTACAATATTGCTGTTGGATTGGCGTCTGTGCTGACATATCTACATCAGGAATGTGAGCAGCAAGTCATCCACAGAGATATAAAGACGGGTAACGTACTACTCGATGGGAACTTCAATGCGAGATTGGGCGACTTTGGATTGGCAAAGCTCATGGATCATGACAAGAGCCCGGTTTCAACTCTAACGGCAGGAACAATGGGATATCTTGCACCTGAGTATCTTCAATATGGGAAAGCAACTGAGAAAACTGACGTGTTCAGCTACGGTGTGGTTATCCTTGAAGTAGCGTGTGGGAGGAGGCCGATTGAAAGAGAACCAGGTACTCAAAAGATGGTCAACCTGGTAGATTGGGTTTGGGGATTGCATTCTCAAGGCAAGATCATTGAAGCAGCTGATAGCAGATTGAATGGGGAGTTCAAGGAAGACGAAATGAAGAAGTTGTTACTTGTTGGATTAAGCTGTGCAAACCCAGATAGCTCGACAAGACCTTCAATGAGGAAGGTCCTACAGATTCTCAACAACGAGGCAGAGCCAGCGTTAGTGCCTAAAATGAAGCCTAGTCTTACATTTTCTTGTGGCTTTTCACTGACCGTGGATGACATTATAATAGAGGAAGAAGGTGGAGGAGAGTGGGAAACTTCAAGGCCAACCATTGTCCAAATAGACTGA 2016 44.59 MTPKIILPLTLFLLIFTTPRTECIGFDFTSFNIRNLTLLGDSHLRDGVIGLTKELGVPSSSAGTVIYNKPIGFYDADANFTASFSTRFSFSITNINPTSSGDGLSFFLSPDNQTLGSPGGYLGLVNSSQLTKNKFLAVEFDTRLDSVFKDPNAHHVGFDIESLISIKTANPASQGVNLKSGKSITAWIEYKNEECRLRVFLSNSSLKPSKALLDVGIDLSSYLKEVMFVGFSGSTEGSTELHLIENWTFNTSGFVSARPRFNPHNVSDSSVIVSPNISLSDSGNGRHSRLGLGLGIAGPAFFCAVIAVFGFFSLMKWRRIRTQKSIKAELLTGPREFSYKELKTATKGFHSSRIIGNGAFGTVYKAFCISSGNISAVKRSKHSHEGKTEFLAELSIIARLRHKNLVQLQGWCVEKGELLLVYDFMPNGSLDKLLYQESSEASLLNWSHRYNIAVGLASVLTYLHQECEQQVIHRDIKTGNVLLDGNFNARLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATEKTDVFSYGVVILEVACGRRPIEREPGTQKMVNLVDWVWGLHSQGKIIEAADSRLNGEFKEDEMKKLLLVGLSCANPDSSTRPSMRKVLQILNNEAEPALVPKMKPSLTFSCGFSLTVDDIIIEEEGGGEWETSRPTIVQID* 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3588410 3590425 - CsaV3_3G004230.1 Csa03g00423 521328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00423 671 Pfam Protein kinase domain 349 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00423 671 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 21 641 - -
Csa03g00423 671 ProSiteProfiles Protein kinase domain profile. 349 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00423 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 256 IPR013320 -
Csa03g00423 671 PANTHER - 21 641 - -
Csa03g00423 671 Gene3D Phosphorylase Kinase; domain 1 312 424 - -
Csa03g00423 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Csa03g00423 671 Pfam Legume lectin domain 25 254 IPR001220 GO:0030246
Csa03g00423 671 SMART serkin_6 349 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00423 671 CDD lectin_legume_LecRK_Arcelin_ConA 26 253 IPR001220 GO:0030246
Csa03g00423 671 Gene3D - 22 264 - -
Csa03g00423 671 SUPERFAMILY Protein kinase-like (PK-like) 332 643 IPR011009 -
Csa03g00423 671 Gene3D Transferase(Phosphotransferase) domain 1 425 641 - -
Csa03g00423 671 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Csa03g00423 671 CDD STKc_IRAK 355 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00423 Csa-Chr3:3588410 Csa03g00698 Csa-Chr3:6286267 6.09E-143 dispersed
Csa06g01876 Csa-Chr6:16922002 Csa03g00423 Csa-Chr3:3588410 1.58E-104 dispersed
Csa06g01897 Csa-Chr6:17104953 Csa03g00423 Csa-Chr3:3588410 2.93E-43 dispersed
Csa03g00423 Csa-Chr3:3588410 Csa03g03262 Csa-Chr3:29836435 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77951 PF00069 Pkinase 3.50E-51 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00423 - - csv:101209797 1293.87