Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00424 ATGGCGGCTTCATATGGTCAAATATCAGAAACAGTAAGTTCCATGGAGATCCCTTTGCCAGTTGATAAGTTAGCGTTGGATCTGGTTGGCCATGACTCCTCCTCTGGCCCTTCAATCAAGCCTAAAATGCTTGTGGTTCTTGTAGCTACTGGAAGCTTCAATCCTCCCACTTATATGCATTTACGTATGTTTGAGCTGGCAAGGGATGCACTGAAAGTAGAGGGCCTTTGTGTTATTGGAGGTTATATGTCTCCAGTTAATGATGCATATAAGAAAAAGGGTCTCATTTCTTCTGAACATCGAATTAAGCTTTGCAATCTAGCATGCCAAAGTTCAGAATACGTCATGGTCGATCCATGGGAGGCCAGTCAAAACACCTATCAACGCACGTTAACTGTTCTGTCTCGAGTCAAGACTTCGCTGTGCGACCATGGATTGCTACCCAAAGAATCCCTGAAGGTGATGCTTGTTTGTGGTTCTGATTTGCTTCAATCTTTTGCAACACCTGGAGTCTGGATACGCGATCAAGTTAAAATCTTATGTCGAGATTTCGGTCTCGTTTGCATTCGAAGAGAAGGACAAGATGTTGAGAAAATCATATTGGATGATGGAATTCTAAACGAGAACAGAAACAATATCAAAATTGTAGATCAAATTGTACCCAACCAAATAAGTTCCACCAGAATAAGGGATTGCATTTCAAGAGGGCTGTCAATCAAATATCTTACGGCAGATGAAGTTATTGAGTATATAAGAGAGCAACATTTGTATCTGAATCCTTGA 783 41.12 MAASYGQISETVSSMEIPLPVDKLALDLVGHDSSSGPSIKPKMLVVLVATGSFNPPTYMHLRMFELARDALKVEGLCVIGGYMSPVNDAYKKKGLISSEHRIKLCNLACQSSEYVMVDPWEASQNTYQRTLTVLSRVKTSLCDHGLLPKESLKVMLVCGSDLLQSFATPGVWIRDQVKILCRDFGLVCIRREGQDVEKIILDDGILNENRNNIKIVDQIVPNQISSTRIRDCISRGLSIKYLTADEVIEYIREQHLYLNP* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3593562 3598952 + CsaV3_3G004240.1 Csa03g00424 521329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00424 260 TIGRFAM TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 49 257 IPR005248 GO:0009435|GO:0016779
Csa03g00424 260 Pfam Cytidylyltransferase-like 48 230 IPR004821 GO:0003824|GO:0009058
Csa03g00424 260 PANTHER NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE 40 257 - -
Csa03g00424 260 Gene3D HUPs 42 260 IPR014729 -
Csa03g00424 260 PANTHER NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE 40 257 - -
Csa03g00424 260 CDD NMNAT_Eukarya 45 257 IPR045094 GO:0000309|GO:0004515|GO:0009435
Csa03g00424 260 SUPERFAMILY Nucleotidylyl transferase 45 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00424 K06210 NMNAT; nicotinamide mononucleotide adenylyltransferase [EC:2.7.7.1 2.7.7.18] - csv:101222585 520.005
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g674 . . . . Bpe09g00125 . . Bma13g01117 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1223 Cone15ag1244 . Csa03g00424 . Cme06g02770 . . . Bda12g00966 . . . . . . . . . . . Cpe14g00786 . Bhi11g00477 . . . . . . . . . . . . . . . Chy06g01889 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004688 3 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 2 1 1 1 1 2 5 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00424 Csa_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0