Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00425 ATGGAATGTGGAGGAACTGCACAAGGAGGAGGAGGAGATGGCTTCCATAGCTATAAAAGACAACATCCTAAACCAACTTCTGGATTGAACATGATGCTGACTCCAAACAAGCCAACCTCCATCAACAACACTCCGAACACCAATCATCATCTCTCGAACGGAGGAACTGCCACTGGAAACTCCTCAGCTACCAGCCCCCTCTCTGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCGTGGTGCGAGAACAAGACCAATACATGCCTATTGCTAATGTGATACGAATCATGAGGCGGATTTTACCCTCCCATGCAAAGATATCCGACGACGCCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTGGCGAGGCGAACGAACGATGCCAACGAGAGCAACGCAAGACAGTGACAGCAGAGGATGTCCTCTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATAGAACCGCTAACTGTTTTTCTTAACCGCTATCGTGAGTCAGAGAGTGACCGAATTCGCACTGAACCAATCTTGAGGCGCAATGTAGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGGCACGTCCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGTGGGAGCGGTGGGCCGAGCGCAGGGAACGGCAGTCAGCTTTGA 723 50.76 MECGGTAQGGGGDGFHSYKRQHPKPTSGLNMMLTPNKPTSINNTPNTNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL* 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3604442 3607034 + CsaV3_3G004250.1 Csa03g00425 521330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00425 240 PRINTS CCAAT-binding transcription factor subunit A signature 137 155 - -
Csa03g00425 240 PRINTS CCAAT-binding transcription factor subunit A signature 118 136 - -
Csa03g00425 240 PRINTS CCAAT-binding transcription factor subunit A signature 156 174 - -
Csa03g00425 240 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 91 154 IPR003958 -
Csa03g00425 240 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 57 195 IPR027113 GO:0001228|GO:0006355|GO:0016602
Csa03g00425 240 ProSitePatterns NF-YB/HAP3 subunit signature. 121 137 IPR003956 GO:0005634|GO:0006355|GO:0043565
Csa03g00425 240 Gene3D Histone, subunit A 76 191 IPR009072 GO:0046982
Csa03g00425 240 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 57 195 - -
Csa03g00425 240 SUPERFAMILY Histone-fold 87 180 IPR009072 GO:0046982
Csa03g00425 240 MobiDBLite consensus disorder prediction 23 66 - -
Csa03g00425 240 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00425 Csa-Chr3:3604442 Csa03g00428 Csa-Chr3:3632231 6.34E-137 dispersed
Csa07g01809 Csa-Chr7:18345320 Csa03g00425 Csa-Chr3:3604442 1.57E-29 dispersed
Csa03g00425 Csa-Chr3:3604442 Csa03g00426 Csa-Chr3:3617539 3.73E-135 tandem
Csa03g00425 Csa-Chr3:3604442 Csa06g00967 Csa-Chr6:7816316 8.82E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31104 PF00808 CBFD_NFYB_HMF 3.10E-25 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00425 K08065 - csv:116402762 404.831