Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00425 ATGGAATGTGGAGGAACTGCACAAGGAGGAGGAGGAGATGGCTTCCATAGCTATAAAAGACAACATCCTAAACCAACTTCTGGATTGAACATGATGCTGACTCCAAACAAGCCAACCTCCATCAACAACACTCCGAACACCAATCATCATCTCTCGAACGGAGGAACTGCCACTGGAAACTCCTCAGCTACCAGCCCCCTCTCTGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCGTGGTGCGAGAACAAGACCAATACATGCCTATTGCTAATGTGATACGAATCATGAGGCGGATTTTACCCTCCCATGCAAAGATATCCGACGACGCCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTGGCGAGGCGAACGAACGATGCCAACGAGAGCAACGCAAGACAGTGACAGCAGAGGATGTCCTCTGGGCTATGGGGAAGCTAGGTTTTGACGACTACATAGAACCGCTAACTGTTTTTCTTAACCGCTATCGTGAGTCAGAGAGTGACCGAATTCGCACTGAACCAATCTTGAGGCGCAATGTAGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGCGTTTCAGATAGGGCACGTCCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGTGGGAGCGGTGGGCCGAGCGCAGGGAACGGCAGTCAGCTTTGA 723 50.76 MECGGTAQGGGGDGFHSYKRQHPKPTSGLNMMLTPNKPTSINNTPNTNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL* 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3604442 3607034 + CsaV3_3G004250.1 Csa03g00425 521330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00425 240 PRINTS CCAAT-binding transcription factor subunit A signature 137 155 - -
Csa03g00425 240 PRINTS CCAAT-binding transcription factor subunit A signature 118 136 - -
Csa03g00425 240 PRINTS CCAAT-binding transcription factor subunit A signature 156 174 - -
Csa03g00425 240 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 91 154 IPR003958 -
Csa03g00425 240 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 57 195 IPR027113 GO:0001228|GO:0006355|GO:0016602
Csa03g00425 240 ProSitePatterns NF-YB/HAP3 subunit signature. 121 137 IPR003956 GO:0005634|GO:0006355|GO:0043565
Csa03g00425 240 Gene3D Histone, subunit A 76 191 IPR009072 GO:0046982
Csa03g00425 240 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 57 195 - -
Csa03g00425 240 SUPERFAMILY Histone-fold 87 180 IPR009072 GO:0046982
Csa03g00425 240 MobiDBLite consensus disorder prediction 23 66 - -
Csa03g00425 240 MobiDBLite consensus disorder prediction 1 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00425 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:116402762 404.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00425 Csa-Chr3:3604442 Csa03g00428 Csa-Chr3:3632231 6.34E-137 dispersed
Csa07g01809 Csa-Chr7:18345320 Csa03g00425 Csa-Chr3:3604442 1.57E-29 dispersed
Csa03g00425 Csa-Chr3:3604442 Csa03g00426 Csa-Chr3:3617539 3.73E-135 tandem
Csa03g00425 Csa-Chr3:3604442 Csa06g00967 Csa-Chr6:7816316 8.82E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g673 . . . . . . . . . Cmo06g00682 . . . . . . . . . . . . . . Cla10g00404 Cam10g0401 Cec10g0423 Cco10g0413 Clacu10g0408 Cmu10g1240 Cre10g0657 . . Cone14ag1222 Cone15ag1295 . Csa03g00425 . Cme06g02755 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g00494 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00425 . 40 180 CCAAT-HAP3 Transcription Factor Family AT5G47670 68.3 1.5e-48 189.9
Csa03g00428 . 16 163 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.2 1.8e-46 183.0
Csa03g00426 . 3 150 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.2 2.3e-46 182.6
Csa03g00427 . 65 173 CCAAT-HAP3 Transcription Factor Family AT5G47670 77.1 2.2e-44 176.0
Csa06g00967 CCT,ECH 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 6.8e-38 154.5
Csa03g00425 . 21 202 CCAAT-HAP3 Transcription Factor Family AT1G21970 56.8 1.0e-49 193.7
Csa03g00428 . 47 185 CCAAT-HAP3 Transcription Factor Family AT1G21970 64.6 1.2e-47 186.8
Csa03g00426 . 34 172 CCAAT-HAP3 Transcription Factor Family AT1G21970 63.9 1.6e-47 186.4
Csa03g00427 . 31 193 CCAAT-HAP3 Transcription Factor Family AT1G21970 57.8 1.4e-46 183.3
Csa04g00494 . 9 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.7 2.4e-38 156.0
Csa06g00967 CCT,ECH 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.2 3.4e-57 218.0
Csa03g00408 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.2 3.4e-49 191.4
Csa04g00494 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 7.2e-47 183.7
Csa03g03243 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 3.9e-45 177.9
Csa05g00631 . 25 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.3 6.3e-43 170.6
Csa05g00631 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.7 4.3e-49 191.0
Csa03g03243 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 2.8e-48 188.3
Csa06g00967 CCT,ECH 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.3e-42 169.5
Csa03g00408 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 8.6e-42 166.8
Csa04g00494 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.5e-41 165.2
Csa03g00408 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.4e-39 159.5
Csa06g00967 CCT,ECH 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.5e-39 157.5
Csa04g00494 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 6.0e-38 154.1
Csa03g03243 . 1 174 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.6 1.2e-63 239.6
Csa05g00631 . 7 148 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.9 5.9e-55 210.7
Csa06g00967 CCT,ECH 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.2e-44 176.4
Csa04g00494 . 9 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 63.9 3.7e-41 164.9
Csa03g00408 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.3e-41 164.1
Csa04g00494 . 19 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.4 1.2e-44 176.8
Csa06g00967 CCT,ECH 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.4e-44 175.3
Csa03g03243 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 5.8e-44 174.5
Csa03g00408 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.1e-41 166.0
Csa05g00631 . 9 128 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.4 1.5e-39 159.8
Csa06g00967 CCT,ECH 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 5.1e-52 201.1
Csa03g00408 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 4.8e-50 194.5
Csa04g00494 . 27 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.7 6.1e-45 177.6
Csa05g00631 . 14 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.7 6.1e-45 177.6
Csa03g03243 . 11 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.6 5.1e-44 174.5
Csa03g03243 . 12 174 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.4 1.5e-61 232.6
Csa05g00631 . 12 137 CCAAT-HAP3 Transcription Factor Family AT3G53340 82.5 1.7e-54 209.1
Csa06g00967 CCT,ECH 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.5e-45 178.7
Csa03g00408 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.3e-41 166.4
Csa04g00494 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.4e-41 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006157 1 1 0 1 1 1 0 1 1 1 1 1 2 1 1 3 1 2 2 1 5 1 2 1 1 1 1 1 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31104 PF00808 CBFD_NFYB_HMF 3.10E-25 CL0012 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00425 Csa_Chr03 FPKM 11.111068 9.731069 2.60745 3.48885 0.858178 0.890877 0.856903 4.092916 3.983539 3.855811