Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00426 | ATGATGCTGACCCCAAACAACCAAACCTCCATCAACAACAATCCGAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTCGACGACTACATAGAACCGCTCACTGTTTTCCTTAACCGCTATCGTGAGTCAGAGAGTGACCGAATTCGCACTGAACCAATGTTGAGGCGCAATGTAGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGGGTTTCAGATAGGGCACGTCCCTGCAGTGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGTGCAGGGAACAACAGCCAGCTTTGA | 633 | 51.5 | MMLTPNNQTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMLRRNVDYGPQVGMISPYGQGFQIGHVPAVMFDAMGGYYGGGGSGGPSAGNNSQL* | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3617539 | 3618171 | + | CsaV3_3G004260.1 | Csa03g00426 | 521331 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00426 | 210 | PRINTS | CCAAT-binding transcription factor subunit A signature | 88 | 106 | - | - | |
Csa03g00426 | 210 | PRINTS | CCAAT-binding transcription factor subunit A signature | 107 | 125 | - | - | |
Csa03g00426 | 210 | PRINTS | CCAAT-binding transcription factor subunit A signature | 126 | 144 | - | - | |
Csa03g00426 | 210 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 61 | 124 | IPR003958 | - | |
Csa03g00426 | 210 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Csa03g00426 | 210 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 | 27 | 171 | - | - | |
Csa03g00426 | 210 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 27 | 171 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Csa03g00426 | 210 | SUPERFAMILY | Histone-fold | 57 | 150 | IPR009072 | GO:0046982 | |
Csa03g00426 | 210 | Gene3D | Histone, subunit A | 45 | 162 | IPR009072 | GO:0046982 | |
Csa03g00426 | 210 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 91 | 107 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00351 | Csa-Chr1:2186973 | Csa03g00426 | Csa-Chr3:3617539 | 1.55E-16 | dispersed | |
Csa03g00426 | Csa-Chr3:3617539 | Csa03g00428 | Csa-Chr3:3632231 | 2.82E-155 | dispersed | |
Csa03g00425 | Csa-Chr3:3604442 | Csa03g00426 | Csa-Chr3:3617539 | 3.73E-135 | tandem | |
Csa03g00426 | Csa-Chr3:3617539 | Csa03g00427 | Csa-Chr3:3622009 | 6.73E-131 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31105 | PF00808 | CBFD_NFYB_HMF | 1.40E-24 | CL0012 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00426 | K08065 | - | csv:116402763 | 399.438 |