Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00426 ATGATGCTGACCCCAAACAACCAAACCTCCATCAACAACAATCCGAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTCGACGACTACATAGAACCGCTCACTGTTTTCCTTAACCGCTATCGTGAGTCAGAGAGTGACCGAATTCGCACTGAACCAATGTTGAGGCGCAATGTAGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGGGTTTCAGATAGGGCACGTCCCTGCAGTGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGTGCAGGGAACAACAGCCAGCTTTGA 633 51.5 MMLTPNNQTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMLRRNVDYGPQVGMISPYGQGFQIGHVPAVMFDAMGGYYGGGGSGGPSAGNNSQL* 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3617539 3618171 + CsaV3_3G004260.1 Csa03g00426 521331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00426 210 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Csa03g00426 210 PRINTS CCAAT-binding transcription factor subunit A signature 107 125 - -
Csa03g00426 210 PRINTS CCAAT-binding transcription factor subunit A signature 126 144 - -
Csa03g00426 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 61 124 IPR003958 -
Csa03g00426 210 MobiDBLite consensus disorder prediction 1 36 - -
Csa03g00426 210 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 27 171 - -
Csa03g00426 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 27 171 IPR027113 GO:0001228|GO:0006355|GO:0016602
Csa03g00426 210 SUPERFAMILY Histone-fold 57 150 IPR009072 GO:0046982
Csa03g00426 210 Gene3D Histone, subunit A 45 162 IPR009072 GO:0046982
Csa03g00426 210 ProSitePatterns NF-YB/HAP3 subunit signature. 91 107 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00351 Csa-Chr1:2186973 Csa03g00426 Csa-Chr3:3617539 1.55E-16 dispersed
Csa03g00426 Csa-Chr3:3617539 Csa03g00428 Csa-Chr3:3632231 2.82E-155 dispersed
Csa03g00425 Csa-Chr3:3604442 Csa03g00426 Csa-Chr3:3617539 3.73E-135 tandem
Csa03g00426 Csa-Chr3:3617539 Csa03g00427 Csa-Chr3:3622009 6.73E-131 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31105 PF00808 CBFD_NFYB_HMF 1.40E-24 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00426 K08065 - csv:116402763 399.438