Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00427 ATGAAATTCTTTTTAATGTATAGATATGGAAGTATAGGAATTGAAGAGAGACTTGAGGTGGGACTGAACACGATGCTGACCCCAAACAACCCAACCTCCATCAACAGCAATCCAAACACCAATCAGCATCTCTCGAACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCATGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCTCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCACCGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTTCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGTGAGTCGGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGATTATGGGGCACAAGTGGGGATGATATCACCGTATGGGCAGGCGTTTCAGATAGGGCAAGTCCCTGCAGGGATGTTTGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGCGCAGGGAACAACAGCCAGCTTTGA 696 49.14 MKFFLMYRYGSIGIEERLEVGLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL* 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3622009 3625576 + CsaV3_3G004270.1 Csa03g00427 521332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00427 231 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 84 147 IPR003958 -
Csa03g00427 231 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 50 196 - -
Csa03g00427 231 MobiDBLite consensus disorder prediction 29 59 - -
Csa03g00427 231 Gene3D Histone, subunit A 69 183 IPR009072 GO:0046982
Csa03g00427 231 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 50 196 IPR027113 GO:0001228|GO:0006355|GO:0016602
Csa03g00427 231 SUPERFAMILY Histone-fold 80 175 IPR009072 GO:0046982
Csa03g00427 231 ProSitePatterns NF-YB/HAP3 subunit signature. 114 130 IPR003956 GO:0005634|GO:0006355|GO:0043565
Csa03g00427 231 PRINTS CCAAT-binding transcription factor subunit A signature 149 167 - -
Csa03g00427 231 PRINTS CCAAT-binding transcription factor subunit A signature 130 148 - -
Csa03g00427 231 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00427 Csa-Chr3:3622009 Csa03g00429 Csa-Chr3:3643113 4.60E-68 dispersed
Csa03g00426 Csa-Chr3:3617539 Csa03g00427 Csa-Chr3:3622009 6.73E-131 tandem
Csa03g00427 Csa-Chr3:3622009 Csa03g00428 Csa-Chr3:3632231 2.37E-134 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31106 PF00808 CBFD_NFYB_HMF 2.50E-24 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00427 K08065 - csv:116402765 392.504