Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00428 | ATGAGAAATTTTCCTATGTATAGACATCAAGGACTGAACATGATGCTGACCCCAAACAACCCAACCTCCATCAACAACAATCCAAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCTAGCAATAATCAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGCATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTCGACGACTACATAGAACCGCTCACTGTTTTCCTTAACCGCTATCGTGAGTCAGAGAGTGACCGAATTCGCACTGAACCAATGTGGAGGCGCAATGTAGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGGGTTTCAGATAGGGCACGTCCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGTGCAGGGAACAACAGCCAGCTTTGA | 672 | 50.74 | MRNFPMYRHQGLNMMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATASNNQQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNNSQL* | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3632231 | 3632984 | + | CsaV3_3G004280.1 | Csa03g00428 | 521333 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00428 | 223 | MobiDBLite | consensus disorder prediction | 19 | 49 | - | - | |
Csa03g00428 | 223 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 104 | 120 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Csa03g00428 | 223 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 74 | 137 | IPR003958 | - | |
Csa03g00428 | 223 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 | 40 | 184 | - | - | |
Csa03g00428 | 223 | Gene3D | Histone, subunit A | 59 | 174 | IPR009072 | GO:0046982 | |
Csa03g00428 | 223 | SUPERFAMILY | Histone-fold | 70 | 163 | IPR009072 | GO:0046982 | |
Csa03g00428 | 223 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 40 | 184 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Csa03g00428 | 223 | PRINTS | CCAAT-binding transcription factor subunit A signature | 101 | 119 | - | - | |
Csa03g00428 | 223 | PRINTS | CCAAT-binding transcription factor subunit A signature | 120 | 138 | - | - | |
Csa03g00428 | 223 | PRINTS | CCAAT-binding transcription factor subunit A signature | 139 | 157 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00425 | Csa-Chr3:3604442 | Csa03g00428 | Csa-Chr3:3632231 | 6.34E-137 | dispersed | |
Csa03g00426 | Csa-Chr3:3617539 | Csa03g00428 | Csa-Chr3:3632231 | 2.82E-155 | dispersed | |
Csa03g00428 | Csa-Chr3:3632231 | Csa03g03243 | Csa-Chr3:29752680 | 5.33E-46 | dispersed | |
Csa03g00427 | Csa-Chr3:3622009 | Csa03g00428 | Csa-Chr3:3632231 | 2.37E-134 | tandem | |
Csa03g00428 | Csa-Chr3:3632231 | Csa03g00429 | Csa-Chr3:3643113 | 9.28E-67 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31107 | PF00808 | CBFD_NFYB_HMF | 1.60E-24 | CL0012 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00428 | K08065 | - | csv:116402763 | 381.719 |