Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00428 ATGAGAAATTTTCCTATGTATAGACATCAAGGACTGAACATGATGCTGACCCCAAACAACCCAACCTCCATCAACAACAATCCAAACACCAATCACCATCTCTCGGACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCTAGCAATAATCAGCAAAACCAACAATGCTTGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGCATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCAACGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTCCTTTGGGCTATGGGGAAGTTAGGTTTCGACGACTACATAGAACCGCTCACTGTTTTCCTTAACCGCTATCGTGAGTCAGAGAGTGACCGAATTCGCACTGAACCAATGTGGAGGCGCAATGTAGATTATGGGCCACAAGTGGGGATGATATCACCGTACGGGCAGGGGTTTCAGATAGGGCACGTCCCTGCAGGGATGTTCGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGTGCAGGGAACAACAGCCAGCTTTGA 672 50.74 MRNFPMYRHQGLNMMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATASNNQQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMWRRNVDYGPQVGMISPYGQGFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNNSQL* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3632231 3632984 + CsaV3_3G004280.1 Csa03g00428 521333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00428 223 MobiDBLite consensus disorder prediction 19 49 - -
Csa03g00428 223 ProSitePatterns NF-YB/HAP3 subunit signature. 104 120 IPR003956 GO:0005634|GO:0006355|GO:0043565
Csa03g00428 223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 137 IPR003958 -
Csa03g00428 223 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 40 184 - -
Csa03g00428 223 Gene3D Histone, subunit A 59 174 IPR009072 GO:0046982
Csa03g00428 223 SUPERFAMILY Histone-fold 70 163 IPR009072 GO:0046982
Csa03g00428 223 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 40 184 IPR027113 GO:0001228|GO:0006355|GO:0016602
Csa03g00428 223 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Csa03g00428 223 PRINTS CCAAT-binding transcription factor subunit A signature 120 138 - -
Csa03g00428 223 PRINTS CCAAT-binding transcription factor subunit A signature 139 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00425 Csa-Chr3:3604442 Csa03g00428 Csa-Chr3:3632231 6.34E-137 dispersed
Csa03g00426 Csa-Chr3:3617539 Csa03g00428 Csa-Chr3:3632231 2.82E-155 dispersed
Csa03g00428 Csa-Chr3:3632231 Csa03g03243 Csa-Chr3:29752680 5.33E-46 dispersed
Csa03g00427 Csa-Chr3:3622009 Csa03g00428 Csa-Chr3:3632231 2.37E-134 tandem
Csa03g00428 Csa-Chr3:3632231 Csa03g00429 Csa-Chr3:3643113 9.28E-67 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31107 PF00808 CBFD_NFYB_HMF 1.60E-24 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00428 K08065 - csv:116402763 381.719