Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00438 ATGCCTGTGTATGAAAAGTTTATGGAGTTTTCGGCTCACACTAGGACTGTATTCCATCGAATCAATCAAATCGATCCCGACAATGTCATGAAAATCATTGGATTCTTACTTCTCCATGATAATGGGGATCAGGAGATGGCGAGGCTAGCACTAGCAAATGAGAGCCATATTGAAAAAGTTGTTATGCTAGCCAAGACTGAGCTGCATCAACTGCGATCGATGCCAGTCCCGGTATCACCATTAGCCATTAGAAACAGGCAGCCTTCAACTTCCCCTCCTGGTTGGGAGCAACAACAGCTTACTAACAAGCATACTCCTGATTACATATCATTAGGCTATCATGATTCTTCTATGTATGACTTACAAAATGCAGCTAACTTATTTTGCTTAGAGGACCATATGGAACAGTCGAACTCGGGTCTCTCTAGCTTTGATTGTAGCTATGCTGATAATATGCTCAATAGCTTTAGTACTAGGAACACCCGCCATTACTCGAATGTGCCGGATTTTCAGCCTAGGACATGTCACTACTACAACAAAGGATTTTGCAAGCATGGAAATAGCTGTAGGTATCTCCATAGCAACCTCGTGCCTGGGAGCCTTTCTCATCTGTATAATACCAATTCTAATGTCAATGATGATCATGTTTTCCGACCTGGTTCACTTGAGAGGTTGGAGTTTGAAATTGTTGAGCTTCTTAAATCAAGAAGAGGCAGTCCTATTTCAATTGCTTCATTGCCAATGATTTACTATGAAAAGTATGGAAAAGTTCTTCAAGCTGAAGGTTACCTAACTGAGAGCCAAAGGCATGGTAAGTCAGGTTTTAGCTTGACGAAGCTCCTCACTCGATTGAAAAACAGCATCCAAGTGATCGACAGGCCTCATGGACAGCATGCAGTCATTTTGGCAGAAGATGCTCCGAAATTCATGGACCATAGGAAGGATAGGAATGATCCCGGGCCGATTGTTAGCAGTGCCCGACAGATATATATGACATTTCCAGCTGACAGTACCTTCACAGAAGATGATGTTTCTGATTACTTCAGTGTCCACTATGGAATGGTTGAAGATGTAAGGATACCCTGCCAACAAAGAAGGATGTTCGGGTTTGTCACATTTCACAGTATGGAGACTGTGAAACTAATCTTGTCTGATGATAGTGAGCATTTGATTTGCGGGGCTCGGGTTCTCGTGAAACCTTATAGAGAAAAGTCCAAGCTGTTGGAAAGGAAATACCAAGAAAGAATTGAACAACAACACCAAGATTACTTTGCTTCACACTACAACAGCCTTGAATCCGAGCAGCTTCACTCAATTGGTAGAGGCTATGATTTCCCCCCCACAATGCTGAGACTAAGGATGGAAGAGCAGCAGCAACAACAGCGTGAACTCGAGAGGAGCCTTTCTGAGATGACCTTAGTTCAGAAATCGGTCGTGAATCAGCCCTACTTTAGCTATCAGATGAACGAACTGAAAGTTCCAGTCCCAGAAGCTACAGAAAGTTTTGAGCATTTGATGGATATTCTCAACGTTCTAAATAGTGGCTCTAACTCTAGCTCGAGCTCTACTGATGATAATAAGCAGCAACCCCACCCCCAAAACGTGACAGATTGGAATCACATGGAACTCAACCTCGAGAGGAAAGAATTGAACAACCACAGCCTACAACAACAACCTCTCGAGGGAATTAATTCATTTCAAATGACATCTACGGGAGAAGGTTCTCCATTTCTCAAGCATCGAGTTCTTCTGTACGGCGGCGATGGCTTCCACGTGAGTTCATTGTCTGACCTGATTTAA 1800 43.11 MPVYEKFMEFSAHTRTVFHRINQIDPDNVMKIIGFLLLHDNGDQEMARLALANESHIEKVVMLAKTELHQLRSMPVPVSPLAIRNRQPSTSPPGWEQQQLTNKHTPDYISLGYHDSSMYDLQNAANLFCLEDHMEQSNSGLSSFDCSYADNMLNSFSTRNTRHYSNVPDFQPRTCHYYNKGFCKHGNSCRYLHSNLVPGSLSHLYNTNSNVNDDHVFRPGSLERLEFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLTRLKNSIQVIDRPHGQHAVILAEDAPKFMDHRKDRNDPGPIVSSARQIYMTFPADSTFTEDDVSDYFSVHYGMVEDVRIPCQQRRMFGFVTFHSMETVKLILSDDSEHLICGARVLVKPYREKSKLLERKYQERIEQQHQDYFASHYNSLESEQLHSIGRGYDFPPTMLRLRMEEQQQQQRELERSLSEMTLVQKSVVNQPYFSYQMNELKVPVPEATESFEHLMDILNVLNSGSNSSSSSTDDNKQQPHPQNVTDWNHMELNLERKELNNHSLQQQPLEGINSFQMTSTGEGSPFLKHRVLLYGGDGFHVSSLSDLI* 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3708765 3712674 + CsaV3_3G004380.1 Csa03g00438 521343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00438 599 SUPERFAMILY CCCH zinc finger 172 194 IPR036855 GO:0046872
Csa03g00438 599 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 8 531 - -
Csa03g00438 599 SMART rrm1_1 328 399 IPR000504 GO:0003723
Csa03g00438 599 ProSiteProfiles OST-type HTH domain profile. 221 304 IPR025605 -
Csa03g00438 599 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 381 IPR000504 GO:0003723
Csa03g00438 599 Gene3D - 334 407 IPR012677 -
Csa03g00438 599 SUPERFAMILY RNA-binding domain, RBD 338 425 IPR035979 GO:0003676
Csa03g00438 599 Coils Coil 454 474 - -
Csa03g00438 599 Pfam OST-HTH/LOTUS domain 221 299 IPR025605 -
Csa03g00438 599 ProSiteProfiles Zinc finger C3H1-type profile. 169 196 IPR000571 GO:0046872
Csa03g00438 599 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 172 194 IPR000571 GO:0046872
Csa03g00438 599 MobiDBLite consensus disorder prediction 513 535 - -
Csa03g00438 599 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 531 - -
Csa03g00438 599 Gene3D - 166 238 - -
Csa03g00438 599 SMART c3hfinal6 169 195 IPR000571 GO:0046872
Csa03g00438 599 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 403 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00438 - - - csv:101203347 1071.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00438 Csa-Chr3:3708765 Csa05g00619 Csa-Chr5:4075491 3.70E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g619 . . . . Bpe09g00132 . . Bma13g01110 Cmo16g00984 . . . . . . . . . . . . . . . Cla10g00430 Cam10g0428 Cec10g0450 Cco10g0440 Clacu10g0435 Cmu10g1266 Cre10g0683 . . Cone14ag1209 Cone15ag1226 . Csa03g00438 . Cme06g02784 . . . Bda12g00954 . . . . Sed08g2938 . . . Cma16g00946 . Car16g00909 Cpe14g00769 . Bhi11g00494 Tan01g1811 . . . . . . . . . . . . Lsi05g00520 . Chy06g01879 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002118 2 2 1 2 1 1 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 2 2 1 11 6 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00438 Csa_Chr03 FPKM 14.447369 11.51865 9.530999 12.368822 12.772352 8.561824 17.613544 3.517969 2.472139 2.354217