Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00440 ATGAAGGAACCTTCACGAAAGAAAGTTCCAAATCAATCTTATGGGTTCTGTGAACAACCACTGCAAGAACCCGGGTCCTGTTACTGGCCTCCTATCAACCATGGAGGTGGCCTGTATTCTGACGATGTATTAGATCAAAATCACTTACCCTCTGAGTCTTTCAAACAGTATTGCAACGTTGAGTCGTCCTCGGGAACTAGTAGTTACCCACATCAAAATTCGTCCTCTACTGCTAGCTTGACATCAATTGGAAGCCCTTCCTCACATCAAGAGTGCCATTCATACCCTATAGACCCGTATTATTCTCCCGACAATAACTGTGGCTCACCTATCAGTAGATCTTGTTTAACGGACGATGCTGCTGATGACTTAAGGCACAAGATCAGGGAATTGGAAACTGCAATGCTTGGACCTGATGCAGATGGGCTTGACGTCTATTCTATCACTGAACCAGTTCATCCTCTATTACCCATGCAAGATGCAGGGTGGAAAGATGTGACTGAGATAATCTCTAGAAGGGATTTGAAAGAGATGCTTTGTGCTTGTGCACGAGCAATAGATGAGAACGATATGATGACTGGAGAATGGTTGGTGTCAGAGTTACGTGGAATGGTCTCAGTTTCTGGTGAGCCGATTCAACGTTTAGGGGCTTACTTGTTAGAGGCACTTGTTGCAAGGACAGCATGTTCAGGTAGTTCTATCTACAAAGCCCTAAGATGTAAAGAGCCTATAGGTGCTGAACTGCTCTCATACATGCATGTTCTATATGAAATTTGCCCTTATTTCAAGTTTGGCTACCTTTCTGCAAATGGGGCAATTGCTGAAGCTATAAAAGGTGAAAATAGAGTTCACATAATTGATTTTCAGATAGCTCAGGGAAACCAATGGATCACGTTGTTGCAAGCTCTCGCCAATCGGCCTGGAGGGCCCCCAAAGGTTACTATTACAGGCATAGATGATTCCACTTCAGCTTTCGCTCGAGGAGGAGGGCTTGAGATTGTCAGAAAAAGGTTGTTGATTTTAGCGGAGTCATTAAAGATACCCTTTGAGTTCCATGGAATTGCAGGCTCTGCTTCTGAGATTCAACGTGAAGATCTAAAAGTTCAACCCGGTGAAGCAATTGCTGTGAGTTTTTCCTTGGTGCTGCACCATATGCCAGACGAAAATGTTGGCAGTCAGAATCACCGGGATCGAATTCTGCAGCTGGTCAAGAGCTTGTCCCCAAAAGTCGTGACGGTTGTCGAGCTCGAGTCAAACAACAATACAGCACCCTTTTTATCTCGTTTCCTCCAGACATTAAAGTATTATACTGCTGTTTTTGAATCCATAGATGTGACACTTCCAAGAGATCACAAGGAGCGAATCAGCGTGGAGCAACACTGTTTAGCTCGAGACATCGTAAATTTAGTAGCATGTGAGGGAACTGAAAGAGTCGAACGTCATGAACTTTTCAGGAAGTGGAGATCACGGTTGTTCATGGCTGGGTTTAAGCCACACCCTTTAAGCCCTTTTGTCAATGCTACTATTGAGGCTCTGCTAAAGAACTACTGTGATAAGTACACACTTGAAGAAAAGGATGGAGCTCTATATCTTGGGTGGTTGAACCAAAATTTGGTTACCTCTAGTGCTTGGATTTGA 1638 43.96 MKEPSRKKVPNQSYGFCEQPLQEPGSCYWPPINHGGGLYSDDVLDQNHLPSESFKQYCNVESSSGTSSYPHQNSSSTASLTSIGSPSSHQECHSYPIDPYYSPDNNCGSPISRSCLTDDAADDLRHKIRELETAMLGPDADGLDVYSITEPVHPLLPMQDAGWKDVTEIISRRDLKEMLCACARAIDENDMMTGEWLVSELRGMVSVSGEPIQRLGAYLLEALVARTACSGSSIYKALRCKEPIGAELLSYMHVLYEICPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLLQALANRPGGPPKVTITGIDDSTSAFARGGGLEIVRKRLLILAESLKIPFEFHGIAGSASEIQREDLKVQPGEAIAVSFSLVLHHMPDENVGSQNHRDRILQLVKSLSPKVVTVVELESNNNTAPFLSRFLQTLKYYTAVFESIDVTLPRDHKERISVEQHCLARDIVNLVACEGTERVERHELFRKWRSRLFMAGFKPHPLSPFVNATIEALLKNYCDKYTLEEKDGALYLGWLNQNLVTSSAWI* 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3721517 3724624 + CsaV3_3G004400.1 Csa03g00440 521345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00440 545 MobiDBLite consensus disorder prediction 65 90 - -
Csa03g00440 545 PANTHER GIBBERELLIN-RESPONSIVE PROTEIN, PUTATIVE-RELATED 17 544 - -
Csa03g00440 545 Pfam GRAS domain family 176 544 IPR005202 -
Csa03g00440 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 544 IPR005202 -
Csa03g00440 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00440 Csa-Chr3:3721517 Csa06g03453 Csa-Chr6:28391622 0 dispersed
Csa03g00359 Csa-Chr3:2994784 Csa03g00440 Csa-Chr3:3721517 3.36E-54 transposed
Csa03g00374 Csa-Chr3:3164194 Csa03g00440 Csa-Chr3:3721517 2.43E-52 transposed
Csa04g01154 Csa-Chr4:9874571 Csa03g00440 Csa-Chr3:3721517 2.13E-60 transposed
Csa06g00684 Csa-Chr6:5597567 Csa03g00440 Csa-Chr3:3721517 4.12E-46 transposed
Csa01g00085 Csa-Chr1:522750 Csa03g00440 Csa-Chr3:3721517 7.68E-58 transposed
Csa03g00440 Csa-Chr3:3721517 Csa06g00941 Csa-Chr6:7561913 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31109 PF03514 GRAS 1.70E-127 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00440 - - csv:101220072 1105.12