Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00441 ATGGACCCCACTGATTCCGACCTCCCCGATCCATCTAATGCCTCCTCCGGTGCTAAGTACAAGCTCTTGTCTCCCGCCAAGCTTCCGATCTCCAGGTCCCCTTGCATTACCATCCCTCCTGGCCTCAGTCCCACTTCATTTCTCGACTCTCCTGTTCTTCTTACCAACTTGAAGGTAGAACCTTCTCCGACTACTGGGTCCTTTACCAAGCTTCCAATGGCACATGACTCTTCTGGCTCAGCGATTTATCCAATGACCAGCATGGCTTTCTCAAATACTAACGCCTCGGATGAAGGAAGATCCAACTACTTTGAGTTCAAACCATATGTTGGACCAAATATGGTTCCTGCAGATTTGAGTCATAGGAAAGGTGAACAATTTTCTGAAGTTCAAGGTCAACCTCAACCTTTTACTGCTCCACCCATGACTAAAATGGAGATCAGTGTCATGTCAAATGATTTGAGTCGATCAACCCAGATGGACACACATACAGTTGCCTCAGGGGTTAGTGTTCCTGAAGCCAATGGAGATGAGATCAACCATAGTTTGAACACAAATAGCAGGGTTCAGGCTCCACAATCTGATCCAAAAGGCAGTGGTATTCCAGTAGTTTCAGATAGGTTATCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCGCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAGCTCTTTGAACGCTCCCATGATGGGCAAATAACTGATATTATCTATAAAGGTACCCATGATCATCCTAAGCCTCAGCCAAGCCGGCGATATTCTGCCAGTGCTTCTATGAATGTTCAAGAAGATGGGACTGATAAGCCTTCATCTTTACCTGGCCAAGATGACAGGTCTTGCAGCATGTATGCTCAGACAATGCATACCATTGAGCCAAATGGAACTACAGATCCATCCATGCCTGCAAATGATAGGATCACTGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCACGATGAGGTTGATGATGATGACATATACTTGAAACGGAGGAAAATGGAACTTGGTGGTTTTGATGTCTGCCCAATGGTTAAACCAATCAGGGAACCGCGTGTTGTGGTTCAAACTCTAAGTGAGGTTGATATACTGGATGATGGGTATCGCTGGCGGAAATATGGTCAGAAGGTAGTGAGAGGAAATCCCAACCCGAGGAGTTATTACAAATGCACAAATGTTGGATGCCCTGTTCGAAAACATGTTGAAAGAGCATCCCATGACCCAAAAGCTGTTATAACTACATATGAAGGGAAACATAATCACGATGTTCCCACTGCAAAAACTAGTAGCCATGATGTCACAGGCCCATCGACAATTCCATCATCAAGGTATAGACTCGAGGAGAGTGACACCATAAGCCTTGATCTCGGCGTTGGCATTGGCACAGGTGGTGAGAATAGATCAAATGAATACAGGCAGGCATTGCATTCACAACTTGTTGAAAACCGAGCTCCAAGTGGGAATTTCAACTTTGAAGTAGTTCAAGAGAACTCGGCACCGACCTATTTCGGTGTGCTCAATAGAAGTGTTATAAATTAG 1602 44.69 MDPTDSDLPDPSNASSGAKYKLLSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVEPSPTTGSFTKLPMAHDSSGSAIYPMTSMAFSNTNASDEGRSNYFEFKPYVGPNMVPADLSHRKGEQFSEVQGQPQPFTAPPMTKMEISVMSNDLSRSTQMDTHTVASGVSVPEANGDEINHSLNTNSRVQAPQSDPKGSGIPVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPSRRYSASASMNVQEDGTDKPSSLPGQDDRSCSMYAQTMHTIEPNGTTDPSMPANDRITEGAGTTLPCKNHDEVDDDDIYLKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVTGPSTIPSSRYRLEESDTISLDLGVGIGTGGENRSNEYRQALHSQLVENRAPSGNFNFEVVQENSAPTYFGVLNRSVIN* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3723776 3732326 - CsaV3_3G004410.1 Csa03g00441 521346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00441 533 MobiDBLite consensus disorder prediction 175 205 - -
Csa03g00441 533 SMART WRKY_cls 209 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00441 533 SMART WRKY_cls 385 444 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00441 533 ProSiteProfiles WRKY domain profile. 380 445 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00441 533 MobiDBLite consensus disorder prediction 441 462 - -
Csa03g00441 533 MobiDBLite consensus disorder prediction 177 194 - -
Csa03g00441 533 SUPERFAMILY WRKY DNA-binding domain 377 445 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g00441 533 MobiDBLite consensus disorder prediction 272 299 - -
Csa03g00441 533 Gene3D WRKY domain 372 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g00441 533 ProSiteProfiles WRKY domain profile. 204 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00441 533 PANTHER WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED 10 527 - -
Csa03g00441 533 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 527 IPR044810 GO:0003700
Csa03g00441 533 SUPERFAMILY WRKY DNA-binding domain 206 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g00441 533 Pfam WRKY DNA -binding domain 210 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00441 533 Pfam WRKY DNA -binding domain 386 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa03g00441 533 MobiDBLite consensus disorder prediction 259 299 - -
Csa03g00441 533 Gene3D WRKY domain 203 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa03g00441 533 MobiDBLite consensus disorder prediction 448 462 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01888 Csa-Chr1:15852778 Csa03g00441 Csa-Chr3:3723776 1.05E-14 dispersed
Csa03g00384 Csa-Chr3:3226389 Csa03g00441 Csa-Chr3:3723776 1.22E-98 dispersed
Csa03g00441 Csa-Chr3:3723776 Csa03g03028 Csa-Chr3:28698684 2.62E-77 dispersed
Csa03g00441 Csa-Chr3:3723776 Csa05g03014 Csa-Chr5:30396040 7.24E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31110 PF03106 WRKY 3.00E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00441 - - csv:101219838 1082.01