Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00442 ATGATGCCTAGTGTAATGACAGAGTCATCAGATAAAGAGACAGAGGCATTTGTAGAGGTGGATCCAACGTGCCGATATGGGCGCTATCCCGAGCTTCTGGGAACAGGGGCGGTAAAGAAAGTGTACAGAGCATTTGATCAAGAAGAAGGAATAGAGGTAGCTTGGAACCAAGTGAAATTAAGGAGTTTTTCAAATGATCCATCCATGATAGATAGGTTGTATTCAGAGGTGAGACTGTTAAGAAGCTTAAAGAACAATAACATAATAGCCTTGTATGATGTTTGGCTTGACAAACTTCATGGAACCTTAAATTTCATTACTGAGGTTTGTACAAGTGGGAACCTTAGAGAGTACCGGAAGAAACATAGACAAGTCTCTTTGAAAGCTTTGAAGAAATGGTCCAAACAAATTCTCAAGGGTTTGCATTATTTGCATTCTAATGACCCTTGTGTAATTCATAGAGATCTCAATTGTAGCAACCTCTTTGTCAATGGCAATGTTGGTCAGGTAAAGATTGGTGACTTGGGTTTGGCAGCAACAGTAAGAAAGAATCACTCAGCTCATTCAGTGCTTGGAACACCAGAATTCATGGCACCTGAGTTATATGAAGAGCATTACACCGAGCTTGTGGATATATATTCATTTGGAATGTGTTTGCTTGAATTAGTGACTCTGGAAATTCCCTATAGTGAATGTGACAATGTTGCCAAAATCTACAAGAAAGTCTCCTCAGGCATCAAGCCTCAAGCCCTTGGCAAGGTCAAGGACCCTGAAGTCAAGGCTTTCATTGAGAATTGCCTTGCCGAATCCAAAGTCCGGCCTTCAGCCGCCGACCTCCTCCGCCACCCCTTTTTCAGAGAAATTGATGATGACGAAAACGAAGACGACAATAACGATCATTAG 903 41.75 MMPSVMTESSDKETEAFVEVDPTCRYGRYPELLGTGAVKKVYRAFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVRLLRSLKNNNIIALYDVWLDKLHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILKGLHYLHSNDPCVIHRDLNCSNLFVNGNVGQVKIGDLGLAATVRKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVSSGIKPQALGKVKDPEVKAFIENCLAESKVRPSAADLLRHPFFREIDDDENEDDNNDH* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3747292 3750073 + CsaV3_3G004420.1 Csa03g00442 521347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00442 300 SUPERFAMILY Protein kinase-like (PK-like) 31 292 IPR011009 -
Csa03g00442 300 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 2 299 - -
Csa03g00442 300 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Csa03g00442 300 CDD STKc_WNK 25 285 - -
Csa03g00442 300 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00442 300 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 299 - -
Csa03g00442 300 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00442 300 Gene3D Transferase(Phosphotransferase) domain 1 110 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00887 Csa-Chr1:5525442 Csa03g00442 Csa-Chr3:3747292 1.45E-128 transposed
Csa01g03451 Csa-Chr1:31514550 Csa03g00442 Csa-Chr3:3747292 5.02E-122 transposed
Csa02g00334 Csa-Chr2:2295834 Csa03g00442 Csa-Chr3:3747292 5.66E-122 transposed
Csa03g00786 Csa-Chr3:6838790 Csa03g00442 Csa-Chr3:3747292 5.90E-113 transposed
Csa04g01684 Csa-Chr4:16267499 Csa03g00442 Csa-Chr3:3747292 2.77E-111 transposed
Csa05g00176 Csa-Chr5:1012906 Csa03g00442 Csa-Chr3:3747292 9.57E-119 transposed
Csa06g01613 Csa-Chr6:13870760 Csa03g00442 Csa-Chr3:3747292 6.23E-114 transposed
Csa07g01167 Csa-Chr7:11442874 Csa03g00442 Csa-Chr3:3747292 1.35E-119 transposed
Csa03g00442 Csa-Chr3:3747292 Csa06g00940 Csa-Chr6:7552851 9.30E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77952 PF00069 Pkinase 4.50E-51 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00442 K08867 - csv:101221172 585.489