Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00443 ATGGAATCAGATCTTGGTAAGCTCTTCATTGGTGGAATTTCGTGGGATACTGATGAAGAGCGTCTTAGGGAATATTTTGGCCACTATGGCGAAGTGGTCGAGGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGTTTTGTTGTCTTTGCAGATCCTGGGGTAGCCGAGCGAGTCATTTTGGACAAACACGTTATCGATGGTCGAACTGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAAAACATGTTGAATAGAAGTAGTGGTAGCATTCATGGTTCTCCTAGCTCGGGACGAACGAAAAAGATTTTCGTTGGAGGGTTAGCTTCGACGGTCACCGAGGCTGACTTTCAGAAGTATTTTGATCAGTTTGGAACAATCACTGATGTTGTTGTTATGTATGATCACAGCACCCAAAGGCCAAGGGGTTTTGGCTTCATTACTTATGACTCGGAGGAATGCGTCGACCGTGTGCTACATAAAACTTTCCATGAACTCAATGGAAAGATGGTTGAGGTTAAGAGAGCAATCCCGAAAGAGCTAACCCCAGGGCCCAACCGGAGCCCTCTTGTAGGATATAACTATGGTATGAGTAGGCCTAGTGGTTTTCTTAACAGCTATACACAAGGCTATAATATGAGTCCTTTGGGAGGTTATGGAGTCCGGCCAGATGGTAGGTTGAGTCCAATAATTAGCAGTCGAACCGGGGTTCCTCATTTTGGTACTGCTAATTATGGGGTGGGTGTGAATTTGGAGCAAGGAATGAGGCAAGGCTATGGCAGGACTTTGAACATTATGAATAGTCAAGCGCAAGAACAAATGTTGAATTCCTATTATAATGGCAATTCAAATAGGTACATTGCCCCAATTGGCTATAGTGGGGGCAATGGAAGAGGCGATTCTCCCTTAAGCTCGAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCAATGCCATGAGCTCTTCTGGCCCCGGCGCTTTCTCTGGCTCTGGAACGGGGAACTTCAGAGTGGCATATGGAAATAATGATGATAATTGGAGTTCACCTGCTGTTGCTAATCATGTTGGGGCAAATGTTCCTGGCTATACTTTTGGAAACAATAATGGCTATGCAATTGGAGACAATAATGGCTTTGGGTTTAGAGGAGGCTATGGAAGAAATGGAGTAGTATCAAATGTGGCAGCACGAAAAGCATTTGTTGAAATGAACAATGGTTATGAGAGGTCATATAGAGACTTATATCGTGATGAAGCGGTGCACGATGATTCGACTTGGCAGTCTACCGCTCCTGAACTGGATGGTTCCGTGTCTTTTGGTTATGGTCTCGGCAATCTTGCTTCTGATGATCCAGCCAAAAGTTCTGAGAGTTTTCTTGCAAGTTATGATGTTTCAAGCAGACAATCAACTAGAGGAATTGCTGCTTAG 1443 44.84 MESDLGKLFIGGISWDTDEERLREYFGHYGEVVEAVIMRDRTTGRARGFGFVVFADPGVAERVILDKHVIDGRTVEAKKAVPKDDQNMLNRSSGSIHGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEECVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQGYNMSPLGGYGVRPDGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQEQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSNAMSSSGPGAFSGSGTGNFRVAYGNNDDNWSSPAVANHVGANVPGYTFGNNNGYAIGDNNGFGFRGGYGRNGVVSNVAARKAFVEMNNGYERSYRDLYRDEAVHDDSTWQSTAPELDGSVSFGYGLGNLASDDPAKSSESFLASYDVSSRQSTRGIAA* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3754227 3757829 + CsaV3_3G004430.1 Csa03g00443 521348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00443 480 Gene3D - 6 88 IPR012677 -
Csa03g00443 480 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Csa03g00443 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 480 - -
Csa03g00443 480 SUPERFAMILY RNA-binding domain, RBD 104 205 IPR035979 GO:0003676
Csa03g00443 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Csa03g00443 480 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Csa03g00443 480 MobiDBLite consensus disorder prediction 84 103 - -
Csa03g00443 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Csa03g00443 480 SMART rrm1_1 7 78 IPR000504 GO:0003723
Csa03g00443 480 SMART rrm1_1 107 179 IPR000504 GO:0003723
Csa03g00443 480 MobiDBLite consensus disorder prediction 86 102 - -
Csa03g00443 480 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 480 - -
Csa03g00443 480 Gene3D - 103 189 IPR012677 -
Csa03g00443 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Csa03g00443 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Csa03g00443 480 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00443 K14411 MSI; RNA-binding protein Musashi - csv:101220541 951.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01598 Csa-Chr1:11578255 Csa03g00443 Csa-Chr3:3754227 2.49E-158 dispersed
Csa02g01037 Csa-Chr2:10022583 Csa03g00443 Csa-Chr3:3754227 2.18E-83 dispersed
Csa02g01467 Csa-Chr2:14105416 Csa03g00443 Csa-Chr3:3754227 3.09E-10 dispersed
Csa03g00443 Csa-Chr3:3754227 Csa03g02615 Csa-Chr3:24703932 4.14E-84 dispersed
Csa06g02210 Csa-Chr6:19911116 Csa03g00443 Csa-Chr3:3754227 1.08E-09 dispersed
Csa04g02503 Csa-Chr4:24865920 Csa03g00443 Csa-Chr3:3754227 5.24E-15 transposed
Csa06g00408 Csa-Chr6:3556101 Csa03g00443 Csa-Chr3:3754227 9.11E-07 transposed
Csa03g00443 Csa-Chr3:3754227 Csa06g00937 Csa-Chr6:7542680 2.31E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g609 . . . . Bpe09g00137 . Bma10g00587 Bma13g01106 Cmo16g00980 Cmo06g00879 . . . . . . . . . . . . . . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 Cone6ag0030 Cone9ag0029 Cone14ag1200 Cone15ag1220 . Csa03g00443 . Cme06g02800 Blo07g00874 . Bda05g00687 Bda12g00948 . Bpe03g00761 . . . . . . Cma16g00941 . Car16g00905 Cpe14g00765 . Bhi11g00503 Tan01g1803 . . . . . . . . . . . . Lsi05g00527 . Chy06g01874 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003655 1 5 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 0 4 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00443 Csa_Chr03 FPKM 1.623932 0.939626 0.197003 0.745643 0.0 0.0 0.0 4.616482 4.507761 5.289484