Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00446 ATGAAGTCGAATCCAACAGGATCGATGGAAACTGGTTTCTTGGGAAACCTTTCTTCTTCTTCCTTTCGAAATTTCCTTCCGCGATCCATCTCTTCTAAGAAAAGCCTCATTTCCTCCATTTCTAAGAAAACCCACAAATCTAACTCTGAAAATACACCTCCAGTTCACCCTAACATTCCCCTTAATGACCATCAAATACCCATTTCTAAGTCCCCCTTCGATTCCAATCTCGATCTCTCTGTATCGCAATCTCTTAGTTTGAAGGATGAAGTTCTTCAGTCGGACAATCAGTTTGAAGTTCCTAACCCGCCTGATCCACCCATCAAGGTTGTTGTGAGGATTAGACCTAATGATAGAGAGAATGAAGTGGAAAGGACGGTTAAAAGGATTTCTTCAGATGAATTGACGTTTGGGGACCGGAAATTTTCGTTTGATTCAGTTTTCGATTCAGATTCGAAACAGGAAGATGTCTTTTCGAAGATTGGAATTCCGCTAGTCAAAGATGCATTGGCTGGTTATAATACTTCTATCATGTCATTTGGTCAGACGGGAAGTGGTAAGACATTCACAATGTGGGGTCCCCCAAGTGCCATGGTTGAAGATCCTTCACCCCTTAGTAACCAAGGTCTTGCTCCTCGCATCTTCCAAATGCTGTTTTCAGAGATTCAAAAGGAACAAGAAAACTCTGAAGGAAAATTGATAAATTATCAGTGTCGTTGCTCTTTTGTAGAGATTTTTAATGAACAAATTGGGGATTTGCTTGATCCTACACAAAGGAACCTTAAGATAAAGGATGATGCGAAGAATGGATTGTATGTGGAGAATGTTACAGAAGAATACGTGACAAGTTATGATGATGTGACTCAGATTCTTATCAAGGGACTTTCGAGTAGAAAAGTTGGAGCAACCACTATAAATTCTAAGAGCTCTAGGTCCCATATTGTGTTTACTTTCATCATTGAGTCATGGTGCAAGGAAACATCATCCAAGTGTTTTGGTAGTTCAAAGACGAGCAGAATCAGCCTTGTTGATCTTGCTGGATTAGATAGGAATGTAACCGATGCCACAGGCAGACAATCCACAAGAGAAGGAAAGAATTTAAAGAAGTCTATGTCACGGCTCGGGCATTTGGTCGATTCATTATCTAAAGAAACTGAAAGACCATCAGAAGATCGTTTGTACAGAGGTTCCTGCTTGACCCATTTACTAAGAGAGTCATTGGGCGGAAATGCTAAGCTCACAGTTATTTGTGCTATCTCTCCAGATAACAACCATTCATGTGAGACATTAAGGACGTTAAGATTCGGCCAACGATTGAAATCCATAAAGAATCAGCCAATCATAAATGAAATAAAGGAAGATGACGTAAATGATCTGAGTGATCAAATTCGTCAACTAAAGGAAGAACTTATAAGAGCAAATGCCAACTCAGGGAAGTCAGTTCGAAAGACTGGTTACTTTCAAGGGCCTAATGTAAGAGACAGCCTGAATCATTTAAGAGTTAGTATCAATCGCTCTCTGATTTTGCCATGCATTGATAACGACTCGGACGAAGAGGTTAATTGTAATGAGGAAGATGTGAGGGAGTTGCATCAGCAACTGGATAAGGCCCACAGCTTTTCTGAAGAGAACTCGGATAAAAGAGACTCACTTCACTTTTCTTCTGTAGGAGAAAGTTTTGCTTCATATTCAATGAGTGATGATGAAGTAAGTTATCCCCAAACAATGGAAGAAATAAACCCTGTAGAACATCATGAGGACAAGATTATTTTAACAGATAATCTTAGTAGTCGTGATTCCAAGGTTCCTGATCCAGTGAATAGAAGGAGCATCTCTGTCAGCTCATTCTATCACTTCTCTAATCTTGAAGATCCACCCTTGTCTGAGTCTCCAAAAATTGGAAATTCTCAAAGGAAAAGTTTGGCTGTTGCACCAAGTTTTGCAGACCATCATGGAAGTAAGATGTCGTCAGACAGCTTTAAGTTTAACAAAGATGTACTGAGGCAGTCACTGAGTCAGAGTAAAAGTATCAGATCCTCGTTGCGATCGAGCAATAATTTCGAGGATCCTACTGAGTCATTGGCAGCTAGTCTTCAAAGGGGTTTAAAGATAATTGATTATCACCAGCAAAGCTCAGCAATAAACAAATCTTCAGTATCCTTCTCCTTTGAACACCTGGCTCGAAAATCATGTCCAGAAGTCAACAAAGCTGTAGGGTCTCTTCAAACACTTGAAGAAGATAATGCTGTTGCCATATCTTCTCCCCATCAGCTTTGTGTATCTTGCAAAAGAAAAATTACCGAGAATGACACTAGTGAAATGCCGAGTAGCAACAACGAACTTGTAGCAGTTAACCAATCCAGGAATCTCAAAGCCATTGTCGGACTCAACCACGTAGACGATCTTGAAAAGGAGAGTGTACAAGAGAAATGTGAAATAAAAGCTCAGAACAATCAAAATTGCTTTACTGACGTGTCTGAGAAGGAAGAACTTCTTAAAGAAATTCAAAATCTAAGGAGTAAGCTGCAAACATTTGCTGATGTTTCGGCTAACAAGTCAACTGACAAGCTGAGATCCTCGCTACTGCTGTCACGCTCGATCCACCTCAGAAAAAGCTGTCTAGGAGGAGGAGGAGGTTCCCAAACTAACGAGGCGGAACTTGAAAAGGAAAGGGAGAGATGGACTGAAATGGAGAGTGAGTGGATTTCTTTAACTGATGAACTGAGAGTTGATTTGGAATCCATTCGACAGCGTGCGGAGAAGGTGGAGCAGGAACTGAACACAGAGAAGAAGTGCAATGAGGAGTTGGAGGATGCACTTCACAGATCTGTTCTTGGACATGCTAGATTTGTTGAGCATTATGCTGAATTGCAAGAGAAGTATAATGAGTTGGTTGGTAAGCACCGTGCCATCATGGGTGGAATAGCTGAGGTGAAAAGGGCTGCACAAAAAGCTGGTTCCAAAGGCAACGGTTCTCGGTTTTCGAAATCACTTGCTGCTGAGCTTTCAGCTCTGAGATTTGAGAGAGACAGAGAGAGAGAATTCTTGAAAAAGGAAAACAAAAGCCTTAAGCTCCAACTTAGAGACACTGCTGAAGCTGTTCATGCTGCTGGGGAACTTCTCGTAAGACTTAGAGAAGCAGAACATTCAGCATCAGTTGCAGAGGAGAGTTTTACATCAGTTCAACAAGAGAACGAGAAGTTGAAGAAGCAAATGGAGAAGCTCAAAAGAAAACATAAAATGGAGATGATTACAATGAAGCAATACCTTGCAGAGAGCAAACTGCCAGCTTCAGCTCTTGAACCACTGTATCATGACGATCACGACGATGTCGGAACCGACAAGAGAGCCTCATATGTGGACGATGATCAAGCCTGGAGATCAGAATTTGGAGCTATATATCAAGAGCAGCACTATTAA 3420 41.11 MKSNPTGSMETGFLGNLSSSSFRNFLPRSISSKKSLISSISKKTHKSNSENTPPVHPNIPLNDHQIPISKSPFDSNLDLSVSQSLSLKDEVLQSDNQFEVPNPPDPPIKVVVRIRPNDRENEVERTVKRISSDELTFGDRKFSFDSVFDSDSKQEDVFSKIGIPLVKDALAGYNTSIMSFGQTGSGKTFTMWGPPSAMVEDPSPLSNQGLAPRIFQMLFSEIQKEQENSEGKLINYQCRCSFVEIFNEQIGDLLDPTQRNLKIKDDAKNGLYVENVTEEYVTSYDDVTQILIKGLSSRKVGATTINSKSSRSHIVFTFIIESWCKETSSKCFGSSKTSRISLVDLAGLDRNVTDATGRQSTREGKNLKKSMSRLGHLVDSLSKETERPSEDRLYRGSCLTHLLRESLGGNAKLTVICAISPDNNHSCETLRTLRFGQRLKSIKNQPIINEIKEDDVNDLSDQIRQLKEELIRANANSGKSVRKTGYFQGPNVRDSLNHLRVSINRSLILPCIDNDSDEEVNCNEEDVRELHQQLDKAHSFSEENSDKRDSLHFSSVGESFASYSMSDDEVSYPQTMEEINPVEHHEDKIILTDNLSSRDSKVPDPVNRRSISVSSFYHFSNLEDPPLSESPKIGNSQRKSLAVAPSFADHHGSKMSSDSFKFNKDVLRQSLSQSKSIRSSLRSSNNFEDPTESLAASLQRGLKIIDYHQQSSAINKSSVSFSFEHLARKSCPEVNKAVGSLQTLEEDNAVAISSPHQLCVSCKRKITENDTSEMPSSNNELVAVNQSRNLKAIVGLNHVDDLEKESVQEKCEIKAQNNQNCFTDVSEKEELLKEIQNLRSKLQTFADVSANKSTDKLRSSLLLSRSIHLRKSCLGGGGGSQTNEAELEKERERWTEMESEWISLTDELRVDLESIRQRAEKVEQELNTEKKCNEELEDALHRSVLGHARFVEHYAELQEKYNELVGKHRAIMGGIAEVKRAAQKAGSKGNGSRFSKSLAAELSALRFERDREREFLKKENKSLKLQLRDTAEAVHAAGELLVRLREAEHSASVAEESFTSVQQENEKLKKQMEKLKRKHKMEMITMKQYLAESKLPASALEPLYHDDHDDVGTDKRASYVDDDQAWRSEFGAIYQEQHY* 1140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3770282 3776818 + CsaV3_3G004460.1 Csa03g00446 521351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00446 1139 MobiDBLite consensus disorder prediction 36 67 - -
Csa03g00446 1139 MobiDBLite consensus disorder prediction 624 658 - -
Csa03g00446 1139 SMART kinesin_4 105 450 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00446 1139 Coils Coil 828 848 - -
Csa03g00446 1139 MobiDBLite consensus disorder prediction 673 692 - -
Csa03g00446 1139 ProSiteProfiles Kinesin motor domain profile. 107 442 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00446 1139 Coils Coil 905 939 - -
Csa03g00446 1139 PANTHER CENTROMERE PROTEIN E 75 790 - -
Csa03g00446 1139 PANTHER CENTROMERE PROTEIN E 774 1137 - -
Csa03g00446 1139 Coils Coil 449 476 - -
Csa03g00446 1139 Gene3D Kinesin motor domain 105 483 IPR036961 -
Csa03g00446 1139 PRINTS Kinesin heavy chain signature 172 193 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00446 1139 PRINTS Kinesin heavy chain signature 303 320 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00446 1139 PRINTS Kinesin heavy chain signature 339 357 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00446 1139 PRINTS Kinesin heavy chain signature 392 413 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00446 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 475 IPR027417 -
Csa03g00446 1139 Coils Coil 799 819 - -
Csa03g00446 1139 Coils Coil 1051 1085 - -
Csa03g00446 1139 Pfam Kinesin motor domain 122 442 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa03g00446 1139 PANTHER KINESIN-LIKE PROTEIN KIN-12F 774 1137 - -
Csa03g00446 1139 PANTHER KINESIN-LIKE PROTEIN KIN-12F 75 790 - -
Csa03g00446 1139 Coils Coil 1013 1033 - -
Csa03g00446 1139 MobiDBLite consensus disorder prediction 1 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00446 K10400 KIF15; kinesin family member 15 - csv:101203593 2152.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00446 Csa-Chr3:3770282 Csa03g01591 Csa-Chr3:11818976 5.87E-73 dispersed
Csa03g00446 Csa-Chr3:3770282 Csa01g02368 Csa-Chr1:20861355 1.89E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g604 . . . . Bpe09g00138 . Bma10g00586 Bma13g01105 Cmo16g00977 . . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1198 Cone15ag1218 . Csa03g00446 . Cme06g02803 Blo07g00875 . Bda05g00688 . . Bpe03g00762 . . . . . . Cma16g00939 . Car16g00903 Cpe14g00763 . Bhi11g00510 . . . . . . . . . . . . . Lsi05g00529 . Chy06g01871 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004807 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 4 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00446 Csa_Chr03 FPKM 0.825581 0.870254 0.653763 1.144828 2.462598 2.625758 2.852487 0.732706 1.405996 1.301252