Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00448 ATGATGGCTCTACACAGGAATCATTTAGGTTCAATAATAAAAGAGCCTCGTTTTGTAGTTAAGAAGTTTCTTGCTAGACCTCAACATGAAGGCCTTGGAGCTGTTGTTAGAAGAAGCATCGGCAGGTCTGAGCTTAAATACTTTGATCCATTCCTTGTTCTTGATGAGTTTTCTGTGAGTGCACCTGGTGGGTTTCCTGATCATCCACATAGAGGATTTGAAACTGTCACTTACATGTTACAGGGAGCAATGATACATGAAGATTTTGAAGGGCATAAAGGAAGAATTGAAGTTGGTGACTTGCAATGGATGACTGCTGGCAAAGGCATTGTTCATTCTGAAATACCTTCTTCCATTGGCACCCAACGTGGCTTACAACTTTGGATCAATCTTTCCTCCAAACACAAAATGATTGAACCGAGGTATCAAGAAATACACAACGAGAACATAGTGGAAGCTACAAGAGAAGGAGTAAAAGTGAGAGTGATAGCGGGTGAAGCCTTGGGAGTAAAATCCCCAATCTACACCAAAACTCCAACCATGTACTTGGACTTCACTCTCGTCCCTGGATCCCGCATTGAGCAGCCAATCCCGACGGGGTGGAATGCGTTCGTGTACGTGCTAGAAGGCGATGGCGGAGTATTCGGAAGCATGAAATTGATGCCGACGGTTACACCACATCACCTTCTTTTGTTAGGGAATGGGGATGGGTTGGAGGTTTGGAACAAGTCATCCACCAAAACTCTAAGGTTCATATTGGTTGGAGGTGAGCCATTGAATGAGAGTGTTGTGCAGTTGGGGCCATTTGTGATGAACACTCAAGAAGAGATTGACCAAACCGTTGAGGATTTTGAGAATTGTACAAATGGCTTTGAGAGAGCAAGGCATTGGAAGAGTTCTTAA 903 43.85 MMALHRNHLGSIIKEPRFVVKKFLARPQHEGLGAVVRRSIGRSELKYFDPFLVLDEFSVSAPGGFPDHPHRGFETVTYMLQGAMIHEDFEGHKGRIEVGDLQWMTAGKGIVHSEIPSSIGTQRGLQLWINLSSKHKMIEPRYQEIHNENIVEATREGVKVRVIAGEALGVKSPIYTKTPTMYLDFTLVPGSRIEQPIPTGWNAFVYVLEGDGGVFGSMKLMPTVTPHHLLLLGNGDGLEVWNKSSTKTLRFILVGGEPLNESVVQLGPFVMNTQEEIDQTVEDFENCTNGFERARHWKSS* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3782790 3784541 - CsaV3_3G004480.1 Csa03g00448 521353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00448 300 PANTHER PIRIN-RELATED 11 300 IPR012093 -
Csa03g00448 300 Gene3D Jelly Rolls 30 285 IPR014710 -
Csa03g00448 300 Pfam Pirin 36 129 IPR003829 -
Csa03g00448 300 SUPERFAMILY RmlC-like cupins 17 298 IPR011051 -
Csa03g00448 300 CDD cupin_pirin_N 34 131 - -
Csa03g00448 300 Pfam Pirin C-terminal cupin domain 182 290 IPR008778 -
Csa03g00448 300 PIRSF Pirin 15 298 IPR012093 -
Csa03g00448 300 CDD cupin_pirin_C 179 258 - -
Csa03g00448 300 PANTHER - 11 300 - -
Csa03g00448 300 Gene3D Jelly Rolls 151 259 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00448 Csa-Chr3:3782790 Csa07g00984 Csa-Chr7:8713044 4.50E-156 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00448 K06911 - csv:101204082 609.372