Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00456 ATGATGGCACCTTCTGATTTATGGATAAAGGAATATAATGAAGCTTCTAAGCTTGGTGATGATATCAATGGCATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCGGAATCCCAACGTCATGCTTCGGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTACAGTCCCTTTTGTTGAAACTTCCTGTAAAGCAGCCCCTGTCTGAAAAGGAGATAAATCGACGTAAAGACATGCTTGTTCAGATGAGATCAAAAGTAAAGCAGATGGCCTCAACGTTGAACATGTCAAACTTTGCTAACCGAGACAGTTTACTTGGCCCAGAGATGAAATCGGCAGATGTAATGAGCAAGACAGCTGAACTAGACAATCAAGGACTTGTTGGTTTTCAAAGAAAAATCATGAAGGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTACAAGTACAAAACATATTGCATTAGCAGTCAATGAAGAACTCAGTCTTCACACTCGCCTAATTGATGACTTGGATCAACATGTTGATGTTACAGACTCTCAATTAGCGAGGGTGCAGAAGAGGTTGGGTATAATGAACAAGCGAGCAAAGGGGAGCTGCTCTTGCTTTGGAATGCTTCTGTCTGTGGTTGGTATTGTGGTTCTTATCACTGTCATATGGCTGCTCGTCCAATACTTGTAA 702 42.02 MMAPSDLWIKEYNEASKLGDDINGMISERSSFPATGPESQRHASAIRRKITILGTKVDGLQSLLLKLPVKQPLSEKEINRRKDMLVQMRSKVKQMASTLNMSNFANRDSLLGPEMKSADVMSKTAELDNQGLVGFQRKIMKEQDEGLEKLEETITSTKHIALAVNEELSLHTRLIDDLDQHVDVTDSQLARVQKRLGIMNKRAKGSCSCFGMLLSVVGIVVLITVIWLLVQYL* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3838327 3841823 + CsaV3_3G004560.1 Csa03g00456 521361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00456 233 Pfam SNARE domain 174 225 IPR000727 -
Csa03g00456 233 PANTHER SYNTAXIN 2 228 IPR045242 -
Csa03g00456 233 SMART tSNARE_6 132 199 IPR000727 -
Csa03g00456 233 CDD SNARE_Qc 140 196 - -
Csa03g00456 233 SUPERFAMILY SNARE fusion complex 128 199 - -
Csa03g00456 233 Gene3D - 139 201 - -
Csa03g00456 233 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
Csa03g00456 233 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 2 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00456 Csa-Chr3:3838327 Csa07g01013 Csa-Chr7:9389098 9.76E-129 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00456 K08503 - csv:101223140 440.269