Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00472 ATGGACGGTTTAGTTAAAGTAGAAACCAAAGAAACCAACACCGTCGCTTTTCTTTGTCGTCAAAAAAACTCCTTCAGATCAGGCACAGCCACGGCCACGGCCACAAACCACAAACCACAGCCCTCTTTCGCCTCTTCCCCCCCAAAACTCAACGCTTTCACTTTTTATTACTCTTCCAACAATCTTAATTACCCGCCAAAACCCCTCTCTTTCTTACCTCTTAATTTTCAATTTTTCAAATTCCCCTCTTCCCCCTTCTCCTTCTCTTCACCTACCACCTCCTTTTCCTCTTCTGGGTCTTCTCCCATGGAGGAAACTGCCCTTGTTGATGTCCAACCCGCTCTCCCCACCTCCGACAAGAGACCCATTGAGATTCATGACGACAATCAACTTGCGGAGCCTCAATCCAGGAAGAAACCTCGGAATGCTTGCGACTTGGGTCCCAATCTCAGAAGGGTAGCTGAGATTGTGTTGGTTATGTCGACTATGACGGCTTTGCGTGGTGGTAAGAAGCCCAGTGATGCTGAGGTTGGATTAATGGCTGAAGCTAGGGCTAAGTTGGTTAGGATTTGTGAAGGATTGCCTCCGAAGGATATTGTGGGAAGGGAGGGTATTAGTGCTTTGATTGAAGACTTGGGGCTCCATGCTAGGGATCAGAAGTTAGGGTTTCGAGGTCCTAGGTTGACGATAGCGGAGAAATTGGCGCAGTCGAAGAAGAAGATGGAAGATTCCAAGAAATATGGCCCACCTCCGGGTTATGGATCCCATACAACCCAAAAAGGTTCCAGTTCATCAGTTGAGAGCCGTGGGCCATTGCCTACAGTACGGATGTTTCCCTCAGAAAAACCAGGTCCTGTCCCAGCTTCTGTGGGAGGTACTGCAGGTACTCTGCCTTCAGGTCATGGTTCTGTTGCTGGTCCTACATCTATACAGGTTCAAGCGCAAACACCGAGCAATGAAGTCAGATCACATATTATTTCAAGTGGATATTCTATTGGTCGTCAAGGAATGGATTCTTCTTCACTCTTGCATGGCACTGAAAGACCATTAAATGGAGCATATGGATCTCAAATGCAAGTTAACTCTTTGGCAAATCATCCTCTGGCGAGTGCTCCAACATGGTCTGCTCAAACTCAGTCTGCTTTGACAACTAAAGGTGGGCCAGAGCACAAGTTTCCCAATCATTCTGCTGTTAATGCTCAGGGAACCACAGACTCAAGGGCATTAAGATCGTCTTCTCAAGCTGCAAGGGACCAGAGCTTTAGACCTCCTATTTCTCAAACTGGGACAGGAAATCTTACTGGTTTGCAGCCGCCTTTACAGAACATGAATTTTGTGCAAGGACCTTCACTTTCTAATAACCACAATGAAATTGTCAAAATTATTCAGAAGCTCTTACAGCCACAACTGCCTGATCATCCTACTTGGAATCCTCCTTCAAGAGATTACATGAACAAAGCTGTGACTTGCCAAACTTGTCAAGTTACCATTAATGAGATTGATACTGTACTTATATGTGATGCTTGTGAGAAAGGATATCACTTGAAATGTGTACAGTCACCTAATCAGAGAGCAATTCCTAGAGGCGAATGGCACTGCCCAAGATGTTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATATGGGCGTGTCATGAGGAGTAACCCGCCACCAAAATTATCAGTCAATACCAGTGGAACTCAGCTACTAGAGAAAAGATCAGGAGCCATAGAACAGAAGGCCAGTGCTGGTCAGTTGAAGTTGGTTTCTAATGGAGGTTCAGATTTGCCAACTCCTCAGCCTGCTGACTATGGAAGCAATGCAAATGAATCATCTGGTATCAAAATTTCGAATGTGGAAGAGATTCATGGAAATAATTTTTTACCAATTAGGAAAGACATAGATGAGAAACCAATACCAACTTCACCGACTTCCTTGAATACCCCAGCCAAATCCTTGGGGCTGGTTTGTGAACCCTCTTCTGGTGAGTTATCAAGTGAAACATCTGCTCAGCCCATTAAAAGTTCTCAAGCATCAATAGGTGATGATAAATCCTCAACGAAAGAAGAGCCTCCAGAAGAATCCCAAACAACAGCTGACAGTTCTAGTCTTCCTAAACCCCCTGACATTCCTCGAATTGTTGATCAGAAAATGGTTTCTGCAGGGCCAGAAATACCCTCCTCAACAGCAAGTGCTCATGATACTTCAATCGTGAAGAAAGATGATCATGAAGTTCTGCAGGAGAATAATGTTGAAAATTTTGAAGCTAGCATCATAAATAGAGAGCAGCCCGGTGCTTCTTCCAATGACTTGCATAATGTTGAATGGATCGGTGAACAATATCAGATTTTAGATATGAGGGCATATTACAAATCCTGTCGAGTTGATGGTGTGACATATAAAGTTGAAGAATTTGCTCTTTTTCAATCCAGCAACGGGAAATTGATGCCCTATAGGCTTCATTCCTTCAGCCATGAATATGAAAGTGGGTTGAAATGGGCTATTCTTAAGAAGTGTTACTTTTATGAGGACTTACCAAAGGAAGTTGCCCATCTCCACCCGTGCTCACCTGAAGAACATGAGGTATATACATCCGATGGCTATATTTGTTTAGATCTGGGCTTAATTCGAGGACCATGTGAAGTTCTTTCTGTTGCAAAGTATAAAGAAGAACTTGAAAGACGAAAACAATTGAGTCCTGGGGAAGATAATGGAATAAAGCCAATTTTCCTGTGCAAGTACGTCGATTTCCTTGGACAATTCTCTAATCCATTTGTTGCTTTTGGAGACCGATATCAAGCACTTCTCCTTTATTGA 2820 43.62 MDGLVKVETKETNTVAFLCRQKNSFRSGTATATATNHKPQPSFASSPPKLNAFTFYYSSNNLNYPPKPLSFLPLNFQFFKFPSSPFSFSSPTTSFSSSGSSPMEETALVDVQPALPTSDKRPIEIHDDNQLAEPQSRKKPRNACDLGPNLRRVAEIVLVMSTMTALRGGKKPSDAEVGLMAEARAKLVRICEGLPPKDIVGREGISALIEDLGLHARDQKLGFRGPRLTIAEKLAQSKKKMEDSKKYGPPPGYGSHTTQKGSSSSVESRGPLPTVRMFPSEKPGPVPASVGGTAGTLPSGHGSVAGPTSIQVQAQTPSNEVRSHIISSGYSIGRQGMDSSSLLHGTERPLNGAYGSQMQVNSLANHPLASAPTWSAQTQSALTTKGGPEHKFPNHSAVNAQGTTDSRALRSSSQAARDQSFRPPISQTGTGNLTGLQPPLQNMNFVQGPSLSNNHNEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQVTINEIDTVLICDACEKGYHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGTQLLEKRSGAIEQKASAGQLKLVSNGGSDLPTPQPADYGSNANESSGIKISNVEEIHGNNFLPIRKDIDEKPIPTSPTSLNTPAKSLGLVCEPSSGELSSETSAQPIKSSQASIGDDKSSTKEEPPEESQTTADSSSLPKPPDIPRIVDQKMVSAGPEIPSSTASAHDTSIVKKDDHEVLQENNVENFEASIINREQPGASSNDLHNVEWIGEQYQILDMRAYYKSCRVDGVTYKVEEFALFQSSNGKLMPYRLHSFSHEYESGLKWAILKKCYFYEDLPKEVAHLHPCSPEEHEVYTSDGYICLDLGLIRGPCEVLSVAKYKEELERRKQLSPGEDNGIKPIFLCKYVDFLGQFSNPFVAFGDRYQALLLY* 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3989330 3996697 - CsaV3_3G004720.1 Csa03g00472 521377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00472 939 Gene3D - 778 917 IPR043151 -
Csa03g00472 939 ProSiteProfiles Zinc finger PHD-type profile. 487 539 IPR019787 -
Csa03g00472 939 SUPERFAMILY FYVE/PHD zinc finger 480 546 IPR011011 -
Csa03g00472 939 SMART PHD_3 489 537 IPR001965 -
Csa03g00472 939 MobiDBLite consensus disorder prediction 255 270 - -
Csa03g00472 939 Pfam PHD-finger 490 537 IPR019787 -
Csa03g00472 939 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 106 917 - -
Csa03g00472 939 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 478 551 IPR013083 -
Csa03g00472 939 MobiDBLite consensus disorder prediction 589 618 - -
Csa03g00472 939 MobiDBLite consensus disorder prediction 115 146 - -
Csa03g00472 939 MobiDBLite consensus disorder prediction 660 683 - -
Csa03g00472 939 MobiDBLite consensus disorder prediction 634 712 - -
Csa03g00472 939 ProSitePatterns Zinc finger PHD-type signature. 490 536 IPR019786 -
Csa03g00472 939 MobiDBLite consensus disorder prediction 372 432 - -
Csa03g00472 939 MobiDBLite consensus disorder prediction 235 307 - -
Csa03g00472 939 MobiDBLite consensus disorder prediction 120 140 - -
Csa03g00472 939 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 106 917 - -
Csa03g00472 939 MobiDBLite consensus disorder prediction 396 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00472 - - - csv:101222588 1634.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00472 Csa-Chr3:3989330 Csa06g03902 Csa-Chr6:30857482 7.91E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31112 PF00628 PHD 2.90E-08 CL0390 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00472 Csa_Chr03 FPKM 95.056808 107.381523 100.949409 98.99437 77.898117 62.19783 74.374359 117.184517 126.013535 115.255127