Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00473 ATGGCCAGCGACACCGAGCCGGCGAAGCTCCTTCTTCCCTACCTCCAGCGAGCCGACGAATTGCAGAAGCATGAGCCTCTTGTCGCATATTACTGTCGATTATATGCTATGGAACGCGGACTCAAGATTCCACCGGGAGAGCGTACCAAGACCACTAATGCCCTCCTTGTTTCCCTCATGAATCAGCTCGAAAAGGATAAGAAGTCACTCAACCTTGGGCCTGATGATAGTTTGCATCTAGAGGGTTTTGCATTGAACGTCTTTGCAAAGGCAGACAAACAAGATCATGCTGGACGAGCAGATTTGAACACTGCAAAAACATTTTATGCTGCCAGCATTTTCTTTGAGATTATTTCCCAGTTTGGTCCACTTCAACCAGATCTTGAGCAAAAACGGAAATATGCAGTCTGGAAAGCAGCCGATATCAGGAAGGCTTTGAAAGAGGGAAGGAAGCCACAGCCTGGTCCACCTTCTGGTGATGATGATCTGTCTGTTCCTTCAAGTACACCTACCAGTGCAAATGATGTAAGACCAGGAGAACCTCAAGTCTCAAGAACTCAATCACAATCAGATTTGTCGCCTCGGGTTTACGATAAGGAGAATAACGATCACACAAATATACCACCAAGTCCTCAGGTCTATGACAACATGAACAATCACACATCTCCACCTGCCCGATTCCATAATGAAGTTGACAATCAGCACCCTCCAAACATTCCATCATACCCTGCAGCTGGTTATCCATCCCATGAGTTCCATATACCTCCTCCGAGGAATGAACAAGACAATTCCTCTTACACTCAGCCATACCACCACATTCAATCCTACTCACAAGAGCATCAACAACCGCCGTTGCCTCATAATTATCCATCTAATGAAACTTCTCCTAATTACTCTTATCCCCATTTCCAATCTTATCCAAGTTTCTCTGAAAGCAGCCTCCCGGCCGCCCCTTCTCACTACCCAACCTATTACCAAGGATCTGATGCTTCATACTCTTCCCAAGTGACTCCTCCTCCAGCCAGCTACCCATCAGCTTCTCAATATCATTCAAACGGCAGAGAGGAGACGGCCTCAGAACCTCAACCTACCTCAGCTCCAGCCAAATCATACCACTACGACAGCAACTACCAGCCAGCTCCTGAGAAAATCGCTGAAGCACACAAGGCCGCGAGGTTTGCAGTAGGGGCTCTGGCCTTTGATGATGTTTCAGTTGCGGTAGAGCATTTGAAGAAGTCACTGGAATTGTTGACTAACCCTTCAGCCAATGTGTGA 1275 47.14 MASDTEPAKLLLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPPGERTKTTNALLVSLMNQLEKDKKSLNLGPDDSLHLEGFALNVFAKADKQDHAGRADLNTAKTFYAASIFFEIISQFGPLQPDLEQKRKYAVWKAADIRKALKEGRKPQPGPPSGDDDLSVPSSTPTSANDVRPGEPQVSRTQSQSDLSPRVYDKENNDHTNIPPSPQVYDNMNNHTSPPARFHNEVDNQHPPNIPSYPAAGYPSHEFHIPPPRNEQDNSSYTQPYHHIQSYSQEHQQPPLPHNYPSNETSPNYSYPHFQSYPSFSESSLPAAPSHYPTYYQGSDASYSSQVTPPPASYPSASQYHSNGREETASEPQPTSAPAKSYHYDSNYQPAPEKIAEAHKAARFAVGALAFDDVSVAVEHLKKSLELLTNPSANV* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3998515 4004191 - CsaV3_3G004730.1 Csa03g00473 521378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00473 424 Pfam Vta1 like 13 148 IPR039431 -
Csa03g00473 424 MobiDBLite consensus disorder prediction 258 303 - -
Csa03g00473 424 MobiDBLite consensus disorder prediction 162 195 - -
Csa03g00473 424 MobiDBLite consensus disorder prediction 329 372 - -
Csa03g00473 424 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG 1 422 IPR044538 GO:0032511
Csa03g00473 424 MobiDBLite consensus disorder prediction 329 377 - -
Csa03g00473 424 Gene3D - 5 152 IPR023175 -
Csa03g00473 424 Pfam Vta1 C-terminal domain 381 418 IPR041212 -
Csa03g00473 424 Gene3D Immunoglobulin FC, subunit C 380 419 - -
Csa03g00473 424 MobiDBLite consensus disorder prediction 146 303 - -
Csa03g00473 424 MobiDBLite consensus disorder prediction 203 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00473 K12199 VTA1, LIP5; vacuolar protein sorting-associated protein VTA1 - csv:101217617 869.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00473 Csa-Chr3:3998515 Csa02g01614 Csa-Chr2:15195777 7.18E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g577 . . . . Bpe09g00150 . Bma10g00579 Bma13g01092 Cmo16g00949 Cmo06g00890 . . . . . . . . . . . . . . Cla10g00471 Cam10g0459 Cec10g0480 Cco10g0468 Clacu10g0478 Cmu10g1307 Cre10g0712 . . Cone14ag1181 Cone15ag1198 . Csa03g00473 . Cme06g02835 Blo07g00882 Blo10g00850 Bda05g00695 Bda12g00936 . Bpe03g00771 . . Sed08g2974 . . . Cma16g00914 . Car16g00887 Cpe14g00739 . Bhi11g00573 Tan01g1750 Cmetu06g1656 . . . . . . . . . . . Lsi05g00561 . Chy06g01849 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004471 2 1 2 3 2 1 2 1 0 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00473 Csa_Chr03 FPKM 4.45949 5.0739 2.908382 2.778883 3.329118 3.198579 3.050488 7.671597 7.487912 8.033192