Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00483 ATGAGGAGAGGGAGAGGGCCGGCCGTTGTACCCCCGCCGCGTGAACCACCAACACCAACCACCGGATCCGACCGGAGATATAGAGGTGTTAGAAAAAGGCCATGGGGAAGATTCGCGGCAGAGATCAGAGATCCATGGAAGAAGACGAGAGTCTGGTTAGGCACCTTCGATTCCGCAGAAGACGCCGCCCGTGCTTACGACCACGCTGCCATAACCCTCCGTGGCTCTAAAGCTAAAACCAATTTTCCCCTTCCCAATCCCACCTCGTTTTTCGATTATCCTCCTCATCCCGTCAACGCTCCAGATCCCTTCCCCGATCCCCGATATCAGATTAGACCTACTTCCAGTAGTTTGAGTTCCACCGTTGAATCCTTCAGCGGTCCTCGCCCTCCCTCCTCCTCCCTTCCTGCCCTTACTAGCACTTCTCCCTCTCGTCGTTACCCTCGTACTCCCCCACTTCTCCCCGAGGATTGCCATAGCGATTGCGATTCTTCTTCCTCCGTTATCGACGACGGCGACGACATCGCTTCCTCCCCTGTCGTTCCTCGGAAAAAAACCCCTCTGCCTTTCGATCTCAACATTCCACCTTCCGATCTTTTTGATTTTAGCAGCGATGATCTTCGATGTACCGCGTTGTGCCTTTGA 645 54.42 MRRGRGPAVVPPPREPPTPTTGSDRRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDHAAITLRGSKAKTNFPLPNPTSFFDYPPHPVNAPDPFPDPRYQIRPTSSSLSSTVESFSGPRPPSSSLPALTSTSPSRRYPRTPPLLPEDCHSDCDSSSSVIDDGDDIASSPVVPRKKTPLPFDLNIPPSDLFDFSSDDLRCTALCL* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4074143 4076200 - CsaV3_3G004830.1 Csa03g00483 521388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00483 214 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Csa03g00483 214 PIRSF PTI6 8 89 IPR017392 GO:0003700
Csa03g00483 214 PIRSF PTI6 131 210 IPR017392 GO:0003700
Csa03g00483 214 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Csa03g00483 214 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Csa03g00483 214 MobiDBLite consensus disorder prediction 110 147 - -
Csa03g00483 214 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Csa03g00483 214 CDD AP2 26 83 IPR001471 GO:0003700|GO:0006355
Csa03g00483 214 MobiDBLite consensus disorder prediction 1 31 - -
Csa03g00483 214 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Csa03g00483 214 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 180 - -
Csa03g00483 214 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Csa03g00483 214 MobiDBLite consensus disorder prediction 88 108 - -
Csa03g00483 214 MobiDBLite consensus disorder prediction 86 186 - -
Csa03g00483 214 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Csa03g00483 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 22 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00483 Csa-Chr3:4074143 Csa06g02395 Csa-Chr6:21412666 5.38E-39 dispersed
Csa03g00483 Csa-Chr3:4074143 Csa06g01353 Csa-Chr6:11476337 1.28E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31113 PF00847 AP2 1.60E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00483 K09286 - csv:101219993 337.035