Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00492 ATGGCTGCGTCATCATCCTTTATGTCACACTCTTTGCAAGCGCATGCTTCCACTGAAACAGCAATAAAATGCTGTAAGGGGTATATGTATGGTAACTTATGTTCATCGTATTCTCGGATTGGATACTCCAGATCCAAGTTCCTAACAAGTCCTAAGTTTTTGCATAACGAGAATTCAACAAAATGGGAACATGTTGAGAAATGTCCAACGAGGAATGAAATCCAGTGCCGAGCTGTGGAAATTGAGAATTCAGTTTCTCCTTTTATTAGCAAAAAGTTTGAGCTTGATGATGTGATTGAAGCTCAACAATTTGATAGAGAGATTCTCAACCATATTTTTGAAGTTGCACTTGATATGGAAAAGATTGAAAAAAGTTCATCTAAAAGCCAAATGCTCAAGGGATATTTGATGGCTACCCTGTTCTATGAGCCCTCAACTAGGACGAGGCTTTCATTTGAATCTGCAATGAAAAGGTTAGGTGGGGAGGTATTGACAACTGAAAATGCACGGGAGTTTTCTTCAGCAGCCAAAGGAGAAACCCTTGAAGATACGATCAGAACTGTTGAGGGATATTCAGATATAATTGTGATGCGTCATTTTGAAAGTGGTGCTGCGAAGAAAGCTGCTGCAACAGCTAGCATTCCTATTATTAATGCTGGTGATGGTCCTGGACAACATCCAACTCAGGCTCTTCTAGATGTATATACTATTCAGAGAGAGATAGGAAAACTTGATGGAATTAAAGTTGGGCTCGTAGGAGATCTTGCTAATGGGAGAACTGTACGGTCGCTTGCATATTTGCTCGCCAAGTATAAAGATGTGAAAATATACTTTGTCTCTCCAGATGTTGTAAAAATGAAGGATGATATAAAAGACTATTTGACATCACAAGATGTGAAATGGGAAGAATGTGACAACTTGACGGAAGTTGCATCAGAGTGTGATGTGGTATATCAAACTCGCATTCAGCGGGAACGATTTGGAGAGAGGATTGATCTTTATGAACAAGCTAGAGGCAAGTACATTGTGGATAAAAATGTGTTAAACGTGATGCAGAGACATGCTGTGGTCATGCACCCCCTCCCTAGGCTTGATGAGATCACCATTGATGTAGATGAGGATCCTAGGGCTGCCTACTTCCGACAAGCAAAGAATGGTCTCTATATACGTATGGCCCTTGTGAAACTCTTGCTACTTGGTTGGTGA 1206 40.63 MAASSSFMSHSLQAHASTETAIKCCKGYMYGNLCSSYSRIGYSRSKFLTSPKFLHNENSTKWEHVEKCPTRNEIQCRAVEIENSVSPFISKKFELDDVIEAQQFDREILNHIFEVALDMEKIEKSSSKSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAAKKAAATASIPIINAGDGPGQHPTQALLDVYTIQREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYKDVKIYFVSPDVVKMKDDIKDYLTSQDVKWEECDNLTEVASECDVVYQTRIQRERFGERIDLYEQARGKYIVDKNVLNVMQRHAVVMHPLPRLDEITIDVDEDPRAAYFRQAKNGLYIRMALVKLLLLGW* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4112254 4116591 + CsaV3_3G004920.1 Csa03g00492 521397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00492 401 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 1 401 - -
Csa03g00492 401 TIGRFAM asp_carb_tr: aspartate carbamoyltransferase 97 398 IPR002082 GO:0004070|GO:0006207
Csa03g00492 401 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 97 238 IPR006132 GO:0006520|GO:0016743
Csa03g00492 401 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 141 160 IPR006130 GO:0006520|GO:0016597|GO:0016743
Csa03g00492 401 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 226 237 IPR006130 GO:0006520|GO:0016597|GO:0016743
Csa03g00492 401 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 353 362 IPR006130 GO:0006520|GO:0016597|GO:0016743
Csa03g00492 401 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 363 386 IPR006130 GO:0006520|GO:0016597|GO:0016743
Csa03g00492 401 Gene3D Aspartate/ornithine carbamoyltransferase 98 393 IPR036901 GO:0006520|GO:0016597|GO:0016743
Csa03g00492 401 PANTHER ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN 1 401 - -
Csa03g00492 401 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 245 396 IPR006131 GO:0006520|GO:0016597|GO:0016743
Csa03g00492 401 PRINTS Aspartate carbamoyltransferase signature 131 153 - -
Csa03g00492 401 PRINTS Aspartate carbamoyltransferase signature 171 180 - -
Csa03g00492 401 PRINTS Aspartate carbamoyltransferase signature 225 242 - -
Csa03g00492 401 PRINTS Aspartate carbamoyltransferase signature 317 326 - -
Csa03g00492 401 PRINTS Aspartate carbamoyltransferase signature 357 362 - -
Csa03g00492 401 PRINTS Aspartate carbamoyltransferase signature 379 393 - -
Csa03g00492 401 Gene3D Aspartate/ornithine carbamoyltransferase 226 385 IPR036901 GO:0006520|GO:0016597|GO:0016743
Csa03g00492 401 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 95 398 IPR036901 GO:0006520|GO:0016597|GO:0016743
Csa03g00492 401 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 141 148 IPR006130 GO:0006520|GO:0016597|GO:0016743
Csa03g00492 401 Hamap Aspartate carbamoyltransferase [pyrB]. 95 400 IPR002082 GO:0004070|GO:0006207
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00492 K00609 pyrB, PYR2; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] - csv:101220705 793.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00492 Csa-Chr3:4112254 Csa03g04229 Csa-Chr3:37034045 1.07E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g558 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00492 . . . . . . . . . . Sed01g2981 . . . . . . Cpe14g00722 . Bhi11g00591 Tan01g1733 Cmetu06g0270 . . . . . . . . . . . . . Chy06g01834 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006067 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 2 1 1 0 1 3 1 1 1 2 0 2 6 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00492 Csa_Chr03 FPKM 21.898331 25.486795 12.532322 11.992698 3.546911 2.868393 3.476517 2.339366 1.624123 2.112773