Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00495 ATGACACCAATTGAGCGCATACTATCTTATAAGTTTAAGAACAAGAAGCTGTTGGAAGAAGCCCTCACCCACTCCTCCTACCTCAACTCTCCCTCCTATGACCGCCTCGAGTTCATCGGAGATTCAGCTATTGGCCTCGCTATTTCCACTTACTTTTTTCCCCTTTATCCGGACCTCAATCAAGGCCAACTCACTTTACTTAGAGCTGCTAACGTTAGCACCGAGAAGCTTGCTCGTGTTGCAGTCCTCCATAGATTGTATAGTTATGTTAGACGCAACGCAGACGATCTTGATGATAATGTTAGAGAGTTTGCCGATGCCGTCGCTCTAGAAGACAACTCAATTCCCTATGGTGGATTGGTGAAGGCTCCTAAAGTTCTTGCTGACATTGTGGAATCTGTGGCTGGTGCTATCTATGTAGATGTTGAGTTTGATCTTCAAAAACTATGGGCGATTATTAAGGATTTTTTAAAGCCTATCTATACTCCTGAAGACTTAGAGGCAGATCCCCAACCTGTAACTCTGCTCTTTGAAGATTGCCAGAAAAAAGGGAAGCAGGTTCATATTGAGAATCAGGAAAAGGGTTCCACGTACGTCGCGAAAGTCTATGTTGACCGTAGGCTTGTTGCTTCTGGCTCTTCGAAGCAAAAACCAATCGCAAGGCTTAATGCTGCCCGAGAAGCTCTTATCATACTGTCGGATTCTACGGATACCAAAATTAAAAGGGCTGTAACTATTGATGGTATTGATGGTTCGTTTGAAATTGAAGGGGCAAAGCAGAAGCTACATGATTTTTGTTGCAGGAAAAAGTGGCAGAGTCCAAGTTACAGTAAAGAAGTTCTTGGACGCCCACATGAAAGAAGATTTGTTTGCTGTGTTAAAATTTCCACTTTTAATGATACGCACTCTATAATCGGAGATGAGAAGTCAAGAGTAAAAGAGGCGGAGAACTCTGCAGCCTCTTTGATGATTCGTGATTTACAGAAAAGAAAGTATCTCTAA 1002 42.61 MTPIERILSYKFKNKKLLEEALTHSSYLNSPSYDRLEFIGDSAIGLAISTYFFPLYPDLNQGQLTLLRAANVSTEKLARVAVLHRLYSYVRRNADDLDDNVREFADAVALEDNSIPYGGLVKAPKVLADIVESVAGAIYVDVEFDLQKLWAIIKDFLKPIYTPEDLEADPQPVTLLFEDCQKKGKQVHIENQEKGSTYVAKVYVDRRLVASGSSKQKPIARLNAAREALIILSDSTDTKIKRAVTIDGIDGSFEIEGAKQKLHDFCCRKKWQSPSYSKEVLGRPHERRFVCCVKISTFNDTHSIIGDEKSRVKEAENSAASLMIRDLQKRKYL* 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4129081 4131467 - CsaV3_3G004950.1 Csa03g00495 521400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00495 333 PANTHER DICER-RELATED 4 324 - -
Csa03g00495 333 Gene3D - 256 330 - -
Csa03g00495 333 Gene3D - 168 243 - -
Csa03g00495 333 SUPERFAMILY RNase III domain-like 3 164 IPR036389 GO:0004525|GO:0006396
Csa03g00495 333 SMART DRBM_3 172 233 IPR014720 -
Csa03g00495 333 SMART DRBM_3 258 328 IPR014720 -
Csa03g00495 333 SUPERFAMILY dsRNA-binding domain-like 258 330 - -
Csa03g00495 333 CDD DSRM_SF 263 324 - -
Csa03g00495 333 Gene3D Ribonuclease III domain 1 166 IPR036389 GO:0004525|GO:0006396
Csa03g00495 333 Pfam Double-stranded RNA binding motif 172 230 IPR014720 -
Csa03g00495 333 Pfam Double-stranded RNA binding motif 258 327 IPR014720 -
Csa03g00495 333 Pfam Ribonuclease III domain 34 141 IPR000999 GO:0004525|GO:0006396
Csa03g00495 333 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 257 329 IPR014720 -
Csa03g00495 333 ProSiteProfiles Ribonuclease III family domain profile. 1 143 IPR000999 GO:0004525|GO:0006396
Csa03g00495 333 PANTHER RIBONUCLEASE 3-LIKE PROTEIN 2-RELATED 4 324 - -
Csa03g00495 333 SMART riboneu5 16 166 IPR000999 GO:0004525|GO:0006396
Csa03g00495 333 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 171 234 IPR014720 -
Csa03g00495 333 CDD RIBOc 16 166 IPR000999 GO:0004525|GO:0006396
Csa03g00495 333 SUPERFAMILY dsRNA-binding domain-like 125 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00495 - - - csv:101206949 658.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00495 Csa-Chr3:4129081 Csa04g01142 Csa-Chr4:9718303 0 dispersed
Csa03g00495 Csa-Chr3:4129081 Csa03g00496 Csa-Chr3:4134996 2.12E-132 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00495 Csa_Chr03 FPKM 0.320413 0.969455 4.896298 4.914832 22.945177 23.291924 23.441261 0.0 0.467302 0.0