Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00500 ATGGCAAACAACTTGGGACCTTTTTCTATCATTTCATCTCTTCTCTTCCTCTCTTTGATCATCGGAACAAGTTTAGCCGCTCGTAATCTAAATGACAATGTGTTAGAATGGGTAAAGAAGGACCATCGTCATTTTCTTCGTGCAGTTATTCACGTATCAGATCTCGACCGTTCTATTCGGTTTTACACTAAAGGCTTTGGAATGAAAGTCTTGAAAAGAAGGAACTTCCCAGATCGTCAATATAGAGATGCCCTCGTTGGGTTTGGACCTGAAAACACTCACTTTTTGTTAGAATTAAGACAAAGACATGATTCCAATAATGTATTTATTGGGACAGAGTTTGGACACTTTGGGATTGCCACTCAAGATGTCTATAAATCTGTGGAGAAAGCTAGAGCTAATGGTGCATTGGTGATCCAAAAACCCCAAAAAATTAACCAAACCATGTTTGCCTTTGTGCAAGATCATGATGGTTATAAGTTTAAGCTCATTCAAAGCAAATGTTTAGCTGATCCTCTTGTTCAAGTTATGTTTCATGTACAAGATTTGAATCGTTCCATTAACTTCTATACAAAGGCATTGGGCATGAAGTTGTTTGAAAAGAAAAACAATTCAACAGGACAGATTGTTTCAGGGACTTTGGGTTATGGAATAAACCAAAGTAAAACAACAGTATTGCAATTGGAAAAGAGGAAAAACATCCCTCGTGATGATGGACGAGATGGTTATTCAATGGTGTATATTGGTACTGACAATGTAAACAAGAGTGCTGATGCAGCTAAGCTGGTAATGAAAGAGCTTGGCGGTAGCGTAATCATCGAGCCTATTCTACTGTCCAATATCAATGTCAAATTAACTGGCTTTTTTGACCCCGATAATTGGATAACGATTATGGTTGACAACAAAGATTATAGAAAGGGAAGGCTTTGA 930 37.74 MANNLGPFSIISSLLFLSLIIGTSLAARNLNDNVLEWVKKDHRHFLRAVIHVSDLDRSIRFYTKGFGMKVLKRRNFPDRQYRDALVGFGPENTHFLLELRQRHDSNNVFIGTEFGHFGIATQDVYKSVEKARANGALVIQKPQKINQTMFAFVQDHDGYKFKLIQSKCLADPLVQVMFHVQDLNRSINFYTKALGMKLFEKKNNSTGQIVSGTLGYGINQSKTTVLQLEKRKNIPRDDGRDGYSMVYIGTDNVNKSADAAKLVMKELGGSVIIEPILLSNINVKLTGFFDPDNWITIMVDNKDYRKGRL* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4161990 4165350 + CsaV3_3G005000.1 Csa03g00500 521405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00500 309 PANTHER LACTOYLGLUTATHIONE LYASE 12 306 - -
Csa03g00500 309 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 48 162 IPR004360 -
Csa03g00500 309 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 175 221 IPR004360 -
Csa03g00500 309 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 48 167 IPR029068 -
Csa03g00500 309 ProSitePatterns Glyoxalase I signature 1. 175 196 IPR018146 GO:0004462|GO:0046872
Csa03g00500 309 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 44 166 IPR037523 -
Csa03g00500 309 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 174 296 IPR029068 -
Csa03g00500 309 Gene3D - 169 307 IPR029068 -
Csa03g00500 309 TIGRFAM glyox_I: lactoylglutathione lyase 33 173 IPR004361 GO:0004462|GO:0046872
Csa03g00500 309 Gene3D - 19 166 IPR029068 -
Csa03g00500 309 PANTHER LACTOYLGLUTATHIONE LYASE 12 306 - -
Csa03g00500 309 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 172 301 IPR037523 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00500 K01759 GLO1, gloA; lactoylglutathione lyase [EC:4.4.1.5] - csv:101203268 611.298
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00109 Csa-Chr2:758978 Csa03g00500 Csa-Chr3:4161990 2.12E-80 dispersed
Csa03g00500 Csa-Chr3:4161990 Csa06g03511 Csa-Chr6:28666313 3.83E-83 dispersed
Csa03g00498 Csa-Chr3:4148612 Csa03g00500 Csa-Chr3:4161990 1.94E-156 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g530 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00494 Cam10g0486 Cec10g0504 Cco10g0489 Clacu10g0505 Cmu10g1332 Cre10g0735 . . . . . Csa03g00500 . Cme06g02233 . . . . . . . . Sed04g0721 . . . Cma16g00898 . Car16g00874 . . Bhi11g00600 Tan01g1721 Cmetu06g0380 . Hepe07g1266 . . . . . . . . . . . Chy06g01826 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008029 0 2 0 0 0 2 1 2 2 1 2 2 1 1 2 1 2 0 1 2 2 1 2 0 2 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00500 Csa_Chr03 FPKM 1.908469 2.065126 0.963349 0.932897 0.795839 0.575532 0.52369 5.408592 5.16415 5.423486