Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00511 ATGGTTGATCTAGACGTCCAGATTCCAAGCGCTTTCGATCCCTTTGCTGACGCCAAAGACTCGGATGCCCCCGGAACCAAAGAATACGTCCATATAAGGGTCCAACAGAGGAATGGAAAGAAGTGTCTAACAACAGTTCAAGGGCTTAAGAAAGAGTTCAGCTATGATAAGATCCTCAAGGACCTGAAGAAGGACTTCTGTTGCAATGGGAATGTTGTGCAGGACAAAGAGCTGGGGAAGATAATCCAGCTCCAAGGCGATCAGCGGAAGAACGTCTCTCAGTTCCTTGTTCAGGCCGGGCTTGTCAAGAAGGATCAAATCAAGATACATGGTTTTTAA 339 46.61 MVDLDVQIPSAFDPFADAKDSDAPGTKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF* 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4274809 4277020 - CsaV3_3G005110.1 Csa03g00511 521416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00511 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Csa03g00511 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
Csa03g00511 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 112 - -
Csa03g00511 112 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 5 112 IPR005874 GO:0003743
Csa03g00511 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Csa03g00511 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Csa03g00511 112 Gene3D - 2 112 - -
Csa03g00511 112 SUPERFAMILY eIF1-like 3 112 IPR036877 GO:0003743|GO:0006413
Csa03g00511 112 PANTHER BNAA10G09260D PROTEIN 1 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00511 Csa-Chr3:4274809 Csa07g01094 Csa-Chr7:10538881 4.65E-76 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00511 K03113 - csv:101214921 229.18