Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00512 ATGATCCACTCTCTCGAACCCAAATTCCACCAAACCCCATTTTCCCTTCTCCGCCGCATCCCCAAATCTCCACACCCCATTTCAATCCGATGCGGCGGCACCACTCGCGAGCTCCGATCTCGACTAGACTCCATCAAAAACACCCAGAAGCTCACCGAAGCCATGAAGCTCGTCGCCGCTGCTAAAGTCCGACGTGCCCAAGAAGCCGTAATCAACAGCCGCCCCTTCTCCCAATCCCTCGCCCAATTTCTCCATTTCCTCACCCAACAAATCCAACGAGAAGACATCGATTTCCCTTTTCTAAACCCCAGACCCGTTGGAAAAGTCGCCGTCGTTGTCTTCACCGGAGACCGAGGCCTCTGCGGAGGCTTCAACGCTTCAGTAATAAAAAAAGCCGAGGCCCGATTGGCGGAATTGAAAAACCTCAATATGGGTCACACCGTAATCAGCATCGGGAAAAAGGGCAATTCCTATTTCCGCCGCCGGTCTGATATTGAAGTCGATCGATTCATCACCGGCGGCGGCGGTGTTTCATTACCCACAGCAAAAGAAGCACAAGCCATAGCAGACATTGTGTTTTCTCTTTTTATCAGCGAAGAAGTAGACAAAGTGGAAGTAATTTACACGAAATTCGTTTCGTTGCTGAAATCTGAGCCTGTGGTTGAGACATTGCTGCCATTGTTGGGGGAAGGGGAAGCCATGGGAGATGGTGGGTTTAGATTGACGACGGCGGAGGGGAAATTGACGGTGGAGAGAGAAGGGAAAGGGGGGGAATTAGGGGAAATTTCGCCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTTTGTATTTGAACAGCCAGATTTTGAGAGCTTTGCAGGAGTCAATGGCGAGTGAAGTTGCGGCGAGGATGAATGCGATGAGTAATGCTTCTGAGAATGCAATGGAATTGAAGAAATCTGTTACGATTGCTTATAATCGAGAGAGACAGGCTAAGATTACTGGGGAGATTTTGGAAATTGTTGCTGGAGCTGAAGCTCTTAAGGAATTTTGA 1053 49.0 MIHSLEPKFHQTPFSLLRRIPKSPHPISIRCGGTTRELRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAQFLHFLTQQIQREDIDFPFLNPRPVGKVAVVVFTGDRGLCGGFNASVIKKAEARLAELKNLNMGHTVISIGKKGNSYFRRRSDIEVDRFITGGGGVSLPTAKEAQAIADIVFSLFISEEVDKVEVIYTKFVSLLKSEPVVETLLPLLGEGEAMGDGGFRLTTAEGKLTVEREGKGGELGEISPLLEFEQDPVQILDGMMALYLNSQILRALQESMASEVAARMNAMSNASENAMELKKSVTIAYNRERQAKITGEILEIVAGAEALKEF* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4279414 4281130 - CsaV3_3G005120.1 Csa03g00512 521417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00512 350 PANTHER ATP SYNTHASE GAMMA CHAIN 8 349 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa03g00512 350 PANTHER ATP SYNTHASE GAMMA CHAIN, CHLOROPLASTIC-LIKE 8 349 - -
Csa03g00512 350 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 34 347 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa03g00512 350 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa03g00512 350 PRINTS ATP synthase gamma subunit signature 202 219 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa03g00512 350 PRINTS ATP synthase gamma subunit signature 294 313 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa03g00512 350 PRINTS ATP synthase gamma subunit signature 325 346 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa03g00512 350 CDD F1-ATPase_gamma 33 344 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa03g00512 350 ProSitePatterns ATP synthase gamma subunit signature. 333 346 IPR023632 -
Csa03g00512 350 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 34 347 IPR035968 GO:0015986|GO:0045261|GO:0046933
Csa03g00512 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 255 347 - -
Csa03g00512 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 33 98 - -
Csa03g00512 350 Gene3D - 99 228 - -
Csa03g00512 350 Pfam ATP synthase 35 347 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa03g00512 350 Hamap ATP synthase gamma chain [atpG]. 32 347 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00596 Csa-Chr1:3840589 Csa03g00512 Csa-Chr3:4279414 6.99E-32 dispersed
Csa03g00512 Csa-Chr3:4279414 Csa06g03519 Csa-Chr6:28692844 8.97E-156 dispersed
Csa03g00512 Csa-Chr3:4279414 Csa01g01075 Csa-Chr1:6678624 3.19E-156 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00512 K02115 - csv:101214682 673.315