Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00519 ATGGGTTGCCGAAACCGTGACTTTTCAGAAGATGAAACTTCCTCTTCCACGCTCAGCGAAGCCCTTCTCTTCGCTACCATGTGCCTCATTGGACTTCCCGTTGAAGTTCACATCAAAGATGGTTCTGTCTATTCCGGTATCTTCCACACTGCTTGTGTCGACAATGAATATGGCGTTGTTCTGAAGAAAGCAAGGATGACAAAAAAGGGTAAAAGGAATGTAAATGTGGATGATGGCGTTGTAATCGATACTCTTATTGTACTTTCTGGTGATCTTGTTCAAGTTGTTGCGACGGAGGTTATACTTCCGGCTGGTAGTTTCTCCAAAAGTTTGGCTGGTTGTGATAACGAATCCAAGGCCAACGATCCTACTTTGTTGCATCCAACTACAGCAGCTAAGACATGTACAGAGTCATTCAAAGAGGGGAGTCAGGTTAATCAAACAAGTGACCTGGTCGAAGATCAAAATGGGTTTGCTCGTGGTTCAGTGCCTACCTTAACTGGGAAGCTAAATGATGTTAGACAACTGTTGCAAGATAATGCTGAGAACAACCAGGGAGATGGACATCAGAAAAGGGAAAAGATAAATTGCAAAAAGCTTGAAGATGTCTCTGATGCTGGAATCAATTGGAGACAGGACCCAGATAACCAATTGAAAAAGGAGCAAGATGATCATGGCCAGGAATTTGACTTGCAAAAAGTAGTCAATGTTGATCGAGTTCAATCCTCTTTATCAAGTGAGAAACCAAGCACTGAAACCATCTCAGCTACCACTACTACAAACGCATTTTCAGTTGGTGTCTCAACTTCTTCACATTCGTCTGTGGATAGCAGCATGGACTCTTGTCATAGTTCTATGTCGTTAACTACTGACATTACTCCTTCTCATAAGGAATTCAAGCTCAACCCTAGAGCCAAACTCTTCTCTCCATCAGTTGCAAATAGCATGTCAGCAACTCCTGCAGCTCCAGTGGCTGCAAATGTGGCTTATATTCCAAACAACTCACCAGTACTACCTGTGCCTGTCGCTCAACCAGAGGTGGAGTTCAGTCCTTTTGTACCTCGTTCACCTGTTCCTGCTGCCAAGTTTGTCCCATATGGAAATTCAATATCTGGTTTTGGTGGCAACGTTCCTCAATTTTCCCAACCTATGGTGGGACATGTGGGAACCAGGACGCAGCCACTCAGATATGTTAGTCAGTATCCCCTCCAGGCTGGTCCAACCTTTGGGCCCCCAAATTCTTCGGCAGTTATGGTTGGTCGTTTTGGGCAACTTGTATATATGCAGCCATTCTCCCATGACTTGGCTCACGGTACGACAGTTGTCTCACCAGTACAACCATGCCCTTTGTTGACCGCACAGCCTGCTCAATATCCGAAACATCAAGGAACTGCTGCAACACAAGCATTGCAGTTTTGTGTTCCTCCCCCTTTTATGGCCGGTGGCCACCAATCGCTCGCCGCAGTGCCTAACCAAATCCCAATTTTGCAGCCCCCCTTCCCACTCAATCGCCCAATGCAAGTCCCAGGAACAAATGCATTCTTCAACACCAAGTTCTAA 1560 45.58 MGCRNRDFSEDETSSSTLSEALLFATMCLIGLPVEVHIKDGSVYSGIFHTACVDNEYGVVLKKARMTKKGKRNVNVDDGVVIDTLIVLSGDLVQVVATEVILPAGSFSKSLAGCDNESKANDPTLLHPTTAAKTCTESFKEGSQVNQTSDLVEDQNGFARGSVPTLTGKLNDVRQLLQDNAENNQGDGHQKREKINCKKLEDVSDAGINWRQDPDNQLKKEQDDHGQEFDLQKVVNVDRVQSSLSSEKPSTETISATTTTNAFSVGVSTSSHSSVDSSMDSCHSSMSLTTDITPSHKEFKLNPRAKLFSPSVANSMSATPAAPVAANVAYIPNNSPVLPVPVAQPEVEFSPFVPRSPVPAAKFVPYGNSISGFGGNVPQFSQPMVGHVGTRTQPLRYVSQYPLQAGPTFGPPNSSAVMVGRFGQLVYMQPFSHDLAHGTTVVSPVQPCPLLTAQPAQYPKHQGTAATQALQFCVPPPFMAGGHQSLAAVPNQIPILQPPFPLNRPMQVPGTNAFFNTKF* 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4331861 4339499 - CsaV3_3G005190.1 Csa03g00519 521424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00519 519 PANTHER ATAXIN 2-RELATED 1 516 IPR045117 GO:0003723
Csa03g00519 519 Pfam Ataxin 2 SM domain 20 97 IPR025852 -
Csa03g00519 519 MobiDBLite consensus disorder prediction 146 165 - -
Csa03g00519 519 MobiDBLite consensus disorder prediction 206 228 - -
Csa03g00519 519 PANTHER POLYADENYLATE-BINDING PROTEIN INTERACTING PROTEIN 1 516 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00519 - - - csv:101213714 979.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00519 Csa-Chr3:4331861 Csa03g04051 Csa-Chr3:35419282 4.91E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g504 . . . . Bpe09g00179 . . . . . . . . . . . . . . . . . . . Cla10g00511 Cam10g0506 Cec10g0523 Cco10g0510 Clacu10g0527 Cmu10g1353 Cre10g0757 . . . Cone15ag1159 . Csa03g00519 . Cme06g02258 . Blo10g00827 . Bda12g00905 . . . . Sed13g1180 . . Cma04g00947 Cma16g00862 . . . . Bhi11g00628 Tan01g1699 Cmetu06g0121 . . Mch10g1264 . . . . . . . . Lsi05g00604 . Chy06g01811 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010644 1 1 1 0 1 1 2 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00519 Csa_Chr03 FPKM 7.279361 6.551822 4.773302 5.657248 2.798367 2.605969 2.438301 13.162832 12.634945 13.41846