Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00520 ATGAAGCAGAAATTCAAATCCAAGAACTCTGGCAAGCAGAAGAGACTATCCGAAAATGAAGAAATTAAGCTCTTAAATTCATGGATTGAATCACAGAAACCGGACTCAGGCTCCAATCCTATGTCGCTTCCTCCGCCGCTACCGAATGCTCCCATTGGCCGTATCGACGACGATACATACTCTCGTTACGCCGGAGCGACGAGGTTTGATCAGCTGCCGATTTCGAGCAAGACCAAAGATGGGTTGCGCAAAGCTGAGTTCATTGACATGACTGACATACAGAAGGCTTCACTGCCTCACGCGCTTTGTGGTCGAGATATTCTTGGTGCAGCTAAAACTGGTTCGGGAAAGACGCTAGCTTTTCTTATACCTGTTCTTGAAAAATTGTATAGAGAGAGATGGGGTCCCGAGTTTGGAGTAGGGAGTATAATAATATCTCCCACAAGAGAATTAGGAGCTCAGCTGTTTGATGTATTGAAAGCTGTAGGAAAATTTCATAATTTCAGTGCTGGCCTATTAATTGGTGGTCGTAAAGATGTTAACACTGAGAAGGAGCACGTGAATGAGTTGAACATTCTTGTCTGCACTCCTGGTCGACTTCTTCAGCATATGGACGAGACTCCAAATTTTGATTGTTCACAGCTTCAGGTTTTAGTCCTTGATGAAGCAGATCGTATTCTTGATGTTGGATTTAAGAAGACTTTAAATGCTATCATCTCACAGCTACCTAAGCACAGACAAACCTTTCTGTTCTCAGCAACTCAAACGAAGTCTGTTCAGGATCTTGCCAGACTCAGTTTGAAAGATCCTGAGTACCTTAGTGTCCATGAAGAATCTACGACTGCCACACCCAATAGTCTACAGCAAACTGCGATGGTTGTCCCTCTTGAGCAGAAGCTGGACATGTTATGGAGCTTTATAAAGGCGCATCTTAATTCTAAGATTCTCGTGTTTCTCTCTAGTTGTAAGCAGGTAAAATTTGTTTTTGAAACTTTCAAAAAGTTGCGCCCTGGAATCCCATTGAAGTGCCTCCATGGAAGGATGAAGCAGGACAAAAGGATGGGTATTTATTCCGAGTTCTGTGAGAAGCGCTCAGTTCTCTTCTCAACAGATGTAGCCTCTAGAGGTCTTGATTTTAACAAGGCTGTTGACTGGGTTGTCCAGGTTGATTGCCCCGAGGATGTGGCTTCTTACATACATAGAGTTGGTCGCACTGCTCGGTACCATTCAGGTGGGAAATCGGTTTTATTTATTATGCCCTCGGAAATGAAAATGCTTGAACAATTGGAATCAGCCAAAGTACCTATTCAGCTTATCAAGGCAAACACAAAAAGACTTCAACCAGTTTCTGGTTTGCTGTCAGCCTTGTTAGTCAAGTATCCTAATTTTCAGCAACTCGCTCAAAGGGCCTTTATCACTTATCTTCGGTCAATTCATATTCAGAAGGATAAGGAAATATTTGATGTTATGAAACTGTCAATTGACGAATTTTCAGCTTCATTGGGGTTGCCAATGACCCCAAAAATTCGTTTCATTGATCAGAAAAGGAGGTCGCAGAAGATGTCTGCTAATCCTACCACTTTTCTTGCATTGGATTCTTCGGGTGATGAGAATGTTTCCAATACAATGGATGGAGAATTGGAGGTTGGTGACTTTAAAGAAAGCGACCAAGGACTTTTTCCACCTATTGATAACCCTTCTAGCGAAGTTGAAGATGCTGTGGCACCTACGCGGATATTGAAGAAAAAGAAGTTAAAGATCAATGTCCACAGGCCAGTAGGGACGAGAGTCAGTTTTGATGATGATGGCAACCCACTTGCCCCTCTTGCTAAGCTTGCTGACATCAAAACTAGCAATGATGCATTTGTAGTCGATAAAGATGAAAAAAATGAGTTCTACAAAAAGAGGAGGGAAGAGTTAAAACAAGCTGACAAGGAAGACAAACTTCTCAATCGGAATCGTCTTAAAGAGAAGCGAAAGGAGAAGATGAATAAGATGAAGAAGAGGGCGGCCAAAGAAACACAGGATGACGAGGATGACATTTCTGAGTCTGAAGAAGAAAGACCACAGAAAAGGTCCAAGAAATTTGTTGACAGTGATAGTGATATTGACAATAAAGTAGAAAACAAGTTCAATACAGAGTCCATTTCAGTGGCAGAACAAGAGGAGTTGGCTCTCAAATTATTGAGTTCTTTGCAATCATAA 2205 41.95 MKQKFKSKNSGKQKRLSENEEIKLLNSWIESQKPDSGSNPMSLPPPLPNAPIGRIDDDTYSRYAGATRFDQLPISSKTKDGLRKAEFIDMTDIQKASLPHALCGRDILGAAKTGSGKTLAFLIPVLEKLYRERWGPEFGVGSIIISPTRELGAQLFDVLKAVGKFHNFSAGLLIGGRKDVNTEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIISQLPKHRQTFLFSATQTKSVQDLARLSLKDPEYLSVHEESTTATPNSLQQTAMVVPLEQKLDMLWSFIKAHLNSKILVFLSSCKQVKFVFETFKKLRPGIPLKCLHGRMKQDKRMGIYSEFCEKRSVLFSTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYHSGGKSVLFIMPSEMKMLEQLESAKVPIQLIKANTKRLQPVSGLLSALLVKYPNFQQLAQRAFITYLRSIHIQKDKEIFDVMKLSIDEFSASLGLPMTPKIRFIDQKRRSQKMSANPTTFLALDSSGDENVSNTMDGELEVGDFKESDQGLFPPIDNPSSEVEDAVAPTRILKKKKLKINVHRPVGTRVSFDDDGNPLAPLAKLADIKTSNDAFVVDKDEKNEFYKKRREELKQADKEDKLLNRNRLKEKRKEKMNKMKKRAAKETQDDEDDISESEEERPQKRSKKFVDSDSDIDNKVENKFNTESISVAEQEELALKLLSSLQS* 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4343806 4349530 + CsaV3_3G005200.1 Csa03g00520 521425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00520 734 Pfam DEAD/DEAH box helicase 91 262 IPR011545 GO:0003676|GO:0005524
Csa03g00520 734 Gene3D - 285 526 IPR027417 -
Csa03g00520 734 SMART helicmild6 326 409 IPR001650 -
Csa03g00520 734 SMART DUF4217_3 448 511 IPR025313 -
Csa03g00520 734 Pfam Domain of unknown function (DUF4217) 453 509 IPR025313 -
Csa03g00520 734 Gene3D - 54 279 IPR027417 -
Csa03g00520 734 MobiDBLite consensus disorder prediction 685 709 - -
Csa03g00520 734 CDD DEADc_DDX10 78 276 - -
Csa03g00520 734 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Csa03g00520 734 CDD SF2_C_DEAD 287 418 - -
Csa03g00520 734 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 295 447 IPR001650 -
Csa03g00520 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 425 IPR027417 -
Csa03g00520 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 275 IPR027417 -
Csa03g00520 734 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 95 IPR014014 GO:0003724
Csa03g00520 734 PANTHER RNA HELICASE 59 532 - -
Csa03g00520 734 Coils Coil 645 687 - -
Csa03g00520 734 MobiDBLite consensus disorder prediction 644 716 - -
Csa03g00520 734 Coils Coil 623 643 - -
Csa03g00520 734 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 219 227 IPR000629 -
Csa03g00520 734 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 59 532 - -
Csa03g00520 734 Pfam Helicase conserved C-terminal domain 299 408 IPR001650 -
Csa03g00520 734 MobiDBLite consensus disorder prediction 27 54 - -
Csa03g00520 734 SMART ultradead3 86 290 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00520 K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] - csv:101213480 1361.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00730 Csa-Chr1:4617836 Csa03g00520 Csa-Chr3:4343806 7.04E-108 dispersed
Csa03g00520 Csa-Chr3:4343806 Csa05g00854 Csa-Chr5:6479569 6.77E-77 dispersed
Csa03g00520 Csa-Chr3:4343806 Csa01g00641 Csa-Chr1:4089424 8.03E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00520 Csa_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0