Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00526 ATGAATTGCTTTCAATGTTGTGGGTCAGAGGAGAAAGTCAATAAAAAGTCTTTGAAAAAGAGCATTAAAGAGTTTGAAGAGACAAAAACTTTAACCTCATTTGCCAACATTTCCTTTAAATCTGATGCTAGTCGGCGAAGGTACATAACTGAGGAGATAAAAAAGTTAGGAAAGGGAAACATCACTGCTCAAATTTTTACATTTGATGAGCTATCAACTGCTACAAATAACTTCAACCACGAAAATCTATTGGGGGAAGGTGGTTTTGGAAGGGTTTACAAAGGCATCATTGAAAGCACAAAACAAGTAACGGCCGTGAAGCAACTTGATCGAAATGGATTTCAAGGAAACAAAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCTAATCTTGTAAATTTGGTTGGTTATTGTGCTGACGGGGATCAGAGGATTTTGGTTTATGAGTACATGGCTAAAGGTTCCTTGGAGGATCATCTTCTTGATATAGCATCAGATAAGCCACCTCTGGACTGGAAGACAAGGATGAAAATTGCCGAAGGAGCGGCAAAAGGACTTGAATACTTACACGAAACCGCTAACCCTCCCGTAATATATCGTGATTTCAAAGCTTCAAACATATTGCTAGATGAGGAATTCAACCCAAAGCTCTCTGATTTTGGTCTTGCAAAGTTAGGTCCTACTGGGGACAAATCTCATGTTTCCACTAGGGTGATGGGAACCTATGGTTACTGTGCTCCTGAATACGCGCTGACTGGACAACTGACGACGAAATCAGATGTCTACAGTTTTGGTGTTGTGTTCTTGGAGATTATAACTGGAAGAAGGGTTATAGACAATGCAAGACCAACAGCAGAACAAAATTTAATTACTTGGGCACAACCACTTTTCAAAGACAGAAGGAAATTTACCCTAATGGCAGATCCAAAGCTAGAAGGGGATTATCCAGTGAAGGCTCTATATCAAGCTTTGGCAGTGGCAGCCATGTGTTTACAAGAGGAAGCAAATACTCGACCATTGATCAGCGACGTGGTTACAGCTCTTGAATATTTAGCCGCAAACAAGGATGTTGATGCAGATGGAGATGTAGATGATGAATCAGATTCAGGTTCGGTATCAGGATCAGGATCAGGATCAGGTTCAGCTTCTCCTGATAGAAGTAGTAACAAAGGAGATAAAAATATTGATGTTGAGGGTGATGGAAGGTGA 1221 40.54 MNCFQCCGSEEKVNKKSLKKSIKEFEETKTLTSFANISFKSDASRRRYITEEIKKLGKGNITAQIFTFDELSTATNNFNHENLLGEGGFGRVYKGIIESTKQVTAVKQLDRNGFQGNKEFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYEYMAKGSLEDHLLDIASDKPPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGDYPVKALYQALAVAAMCLQEEANTRPLISDVVTALEYLAANKDVDADGDVDDESDSGSVSGSGSGSGSASPDRSSNKGDKNIDVEGDGR* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4374615 4378144 + CsaV3_3G005260.1 Csa03g00526 521431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00526 406 PANTHER OS07G0668900 PROTEIN 3 373 - -
Csa03g00526 406 MobiDBLite consensus disorder prediction 362 406 - -
Csa03g00526 406 Gene3D Transferase(Phosphotransferase) domain 1 155 375 - -
Csa03g00526 406 Gene3D Phosphorylase Kinase; domain 1 63 154 - -
Csa03g00526 406 SUPERFAMILY Protein kinase-like (PK-like) 62 350 IPR011009 -
Csa03g00526 406 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 3 373 - -
Csa03g00526 406 CDD STKc_IRAK 84 353 - -
Csa03g00526 406 MobiDBLite consensus disorder prediction 372 392 - -
Csa03g00526 406 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00526 406 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Csa03g00526 406 Pfam Protein kinase domain 79 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00526 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00526 Csa-Chr3:4374615 Csa03g01426 Csa-Chr3:10668107 0 dispersed
Csa06g03658 Csa-Chr6:29410431 Csa03g00526 Csa-Chr3:4374615 2.57E-48 dispersed
Csa07g01084 Csa-Chr7:10410700 Csa03g00526 Csa-Chr3:4374615 2.15E-24 dispersed
Csa03g00526 Csa-Chr3:4374615 Csa05g00641 Csa-Chr5:4259160 8.55E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77954 PF00069 Pkinase 3.50E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00526 - - csv:101212756 745.347