Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00529 ATGATCTCTTCTTTAACTCAATCTGCGAAATCCATTAATGGGTCCGACGTGATTCTCCGGCGGAGTTCTCCGGTGCCAATTAGGCGGTTTTCGTGTTCACCTTCATTGCCGGCGCAAAAACCCCACAGCTCGGTTGTGTGCGTGAAAAATGCTCTTCATATCTCATCGGTTTCCAATTTTGGGACGTTGGGAACTCGGAAGAGTGATTTCAATGCGTGCAAAGCGTACGAGGCTGACCGATCGCAGCCGATTGAGTCGAACATTGAACTGACTGTGGCCGACCAGCCGTCTGAGGCGGCGAAGAAGGTGAAGATCGGACTGTATTTTGCTCTTTGGTGGAGTTTGAACGTTGTGTTCAACATTTACAATAAGAAGGTTTTGAATGCGTATCCATATCCATGGCTAACCTCCACACTTTCTCTTGCTGTTGGTTCTCTCATCATGTTAGTCTCTTGGATGACGAGGGTCGCTGAGGCTCCCAAGACTGATTTCGAGTTTTGGAAATCTTTGTTCCCTGTTGCTGTGGCCCACACAATTGGTCATGTAGCTGCAACAGTGAGCATGTCAAAGGTTGCTGTCTCATTCACCCATATTATCAAAAGTGGTGAGCCTGCATTTAGCGTATTGGTTTCAAGGTTCCTGTTGGGTGAGACTTTCCCTATTCCTGTCTACCTCTCTCTTCTCCCGATCATCGGTGGTTGTGCTCTTGCTGCCGTGACTGAGCTCAACTTCAATATGATAGGTTTCATGGGAGCCATGATATCAAACTTGGCATTTGTCTTCAGAAACATATTTTCCAAGAAAGGCATGAAGGGGAATTCTGTTAGTGGAATGAACTACTATGCATGTTTGTCTATATTATCCCTGTTGCTACTTACCCCGTTCGCAATTGCTGTCGAAGGACCACAGATGTGGGCTGCAGGATGGAAAACAGCTCTCTCTGAAATTGGACCTAATTTTGTGTGGTGGGTAGCAGCACAGAGTGTCTTCTATCATCTCTACAACCAAGTATCTTACATGTCGCTGGACGAAATTTCTCCGTTGACGTTCAGCATTGGCAACACGATGAAACGTATATCGGTCATAGTTTCTGCAATAATCATCTTTCGCACGCCTGTCCAGCCCGTCAACGCTCTTGGAGCTGCAATCGCAGTTCTTGGAACCTTCTTATATTCACAGGCAAAACAATAA 1191 46.18 MISSLTQSAKSINGSDVILRRSSPVPIRRFSCSPSLPAQKPHSSVVCVKNALHISSVSNFGTLGTRKSDFNACKAYEADRSQPIESNIELTVADQPSEAAKKVKIGLYFALWWSLNVVFNIYNKKVLNAYPYPWLTSTLSLAVGSLIMLVSWMTRVAEAPKTDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPIPVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGNSVSGMNYYACLSILSLLLLTPFAIAVEGPQMWAAGWKTALSEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSAIIIFRTPVQPVNALGAAIAVLGTFLYSQAKQ* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4405822 4410298 - CsaV3_3G005290.1 Csa03g00529 521434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00529 396 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 104 395 IPR004696 GO:0016021|GO:0022857|GO:0055085
Csa03g00529 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 145 239 - -
Csa03g00529 396 PANTHER SOLUTE CARRIER FAMILY 35 30 396 - -
Csa03g00529 396 Pfam Triose-phosphate Transporter family 104 392 IPR004853 -
Csa03g00529 396 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC-LIKE 30 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00529 Csa-Chr3:4405822 Csa05g02508 Csa-Chr5:26685270 1.06E-77 dispersed
Csa01g03356 Csa-Chr1:30125950 Csa03g00529 Csa-Chr3:4405822 0 transposed
Csa03g00996 Csa-Chr3:8059633 Csa03g00529 Csa-Chr3:4405822 2.47E-100 transposed
Csa03g00529 Csa-Chr3:4405822 Csa06g03531 Csa-Chr6:28754571 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00529 K15283 - csv:101216838 768.074