Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00532 ATGTGGAACACTGGAGCTCCTGCTGATTCTTTCTATGAGGTTCGCCCTGAGTGCACCGATGTTCCCAAAACCCGTTTCAAGATCAGGGCTGGGAAAACCTTAAGTGTTAGAAAATGGCAGGCAGCATTTAATCCTGAAGGGCAACTTGACATATCAAAGACTTTAAATCGCATACATCGTGGGGGGATCCATCCTTCAATCAGAGGAGAAGTTTGGGAATTTCTTCTTGGTTGCTATGATCCTATGAGTACCTTCGAGGAAAGAGAAGCAATTCGCCAGCGTCGAAGGATTGAGTATGCCACTTGGAAGGAAGATTGTCGACAAATGTTTCCTGTCGTTGGAAGTGGTAGATACATCACAGCTCCTGTAATCACAGAGGATGGTCAGCCCATTCATGATCCACTTGTACTCTTGGAAACAAATCCGGACAAAGGTCCAGCTGTACCTCAAGATACTAGCACCGCTGATGGCAATCCGGATGGTTCACGGTCAACTCCTAATAATAATTTGGAAACTGTGAAGGATCCGAAAATAATTCAGTGGATGCTTACTTTACATCAGATAGGTCTTGATGTGGTTCGGACTGACAGAACATTGGTATTCTATGAAAAGCAAGAAAACTTATCAAAACTTTGGGATATTCTTGCTGTTTATGCCTGGATAGATAAAGACGTCGGTTACTGTCAAGGAATGAGTGATCTTTGTTCCCCCATGATAATGCTTCTTGAAGATGAAGGCGATGCATTTTGGTGCTTTGAGCGTTTAATGCGCAGACTGCGAGGGAACTTCAGATGCACTGATAGCTCTGTAGGTGTGGAAACTCAACTCAATAATTTGGCTGCTATCACACAAGTCATTGATCCAAAACTTCATCAGCACTTGGAGACACTTGGCGGTGGAGATTATCTTTTTGCTTTCAGGATGCTTATGGTTTTGTTCCGTCGAGAGTTTTCCTTTTGTGATTCCTTGTATCTCTGGGAGATGATGTGGGCCCTGGAATATGATCCTGATCTATGTGTATTGTATGAAGAACCTGATATTGGAAATGAGAAAGGAGAGGGATCGAAAGGAAAAGCAAAATCGATACGCCAATGTGGGAAATATGAGAGGGAGAACTTGAAAGCAAAGAACTCAGAAGCTCCTCTTCCCATCTCTGTTTTCCTTGTTGCTAGTGTCTTGAAAGATAAGAGCACAAAGCTACTTACAGAAGCTCGGGGTCTAGACGATGTTGTGAAGATATTAAATGACATGACTGGAAATCTGGATGCCAAAAAAGCTTGCACTGGGGCAATGAAGCTTCACAAGAAATATCTAAAAAAGGCCAAGAAGGCATAG 1335 42.92 MWNTGAPADSFYEVRPECTDVPKTRFKIRAGKTLSVRKWQAAFNPEGQLDISKTLNRIHRGGIHPSIRGEVWEFLLGCYDPMSTFEEREAIRQRRRIEYATWKEDCRQMFPVVGSGRYITAPVITEDGQPIHDPLVLLETNPDKGPAVPQDTSTADGNPDGSRSTPNNNLETVKDPKIIQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIMLLEDEGDAFWCFERLMRRLRGNFRCTDSSVGVETQLNNLAAITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLCVLYEEPDIGNEKGEGSKGKAKSIRQCGKYERENLKAKNSEAPLPISVFLVASVLKDKSTKLLTEARGLDDVVKILNDMTGNLDAKKACTGAMKLHKKYLKKAKKA* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4436725 4441721 + CsaV3_3G005320.1 Csa03g00532 521437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00532 444 Gene3D - 269 444 - -
Csa03g00532 444 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 165 263 - -
Csa03g00532 444 SMART tbc_4 59 356 IPR000195 -
Csa03g00532 444 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 293 IPR035969 -
Csa03g00532 444 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 271 437 IPR035969 -
Csa03g00532 444 MobiDBLite consensus disorder prediction 140 171 - -
Csa03g00532 444 ProSiteProfiles TBC/rab GAP domain profile. 62 333 IPR000195 -
Csa03g00532 444 PANTHER - 1 443 - -
Csa03g00532 444 MobiDBLite consensus disorder prediction 146 171 - -
Csa03g00532 444 Pfam Rab-GTPase-TBC domain 178 331 IPR000195 -
Csa03g00532 444 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00532 - - - csv:101211793 870.537
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00208 Csa-Chr2:1437158 Csa03g00532 Csa-Chr3:4436725 1.66E-07 dispersed
Csa03g00532 Csa-Chr3:4436725 Csa07g01571 Csa-Chr7:16125083 0 dispersed
Csa03g00532 Csa-Chr3:4436725 Csa03g01962 Csa-Chr3:15507376 3.73E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g459 . . . . Bpe09g00186 . Bma10g00537 Bma13g01036 Cmo16g00908 . . . . . . . . . . . . . . . Cla10g00525 Cam10g0520 Cec10g0537 Cco10g0527 Clacu10g0542 Cmu10g1368 Cre10g0770 Cone6ag0083 Cone9ag0098 . . Lsi02g01909 Csa03g00532 . Cme06g02277 . Blo10g00812 Bda05g00732 Bda12g00897 . Bpe03g00801 . . Sed07g1928 . . . Cma16g00851 . Car16g00853 . Cpe01g00856 Bhi11g00647 Tan01g1682 Cmetu06g1724 . . Mch10g1229 . . . . . . . . Lsi05g00620 . . Cme01g01052
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004197 2 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00532 Csa_Chr03 FPKM 24.21167 23.02614 28.820597 25.731596 26.539206 20.317549 29.363663 15.655009 15.346424 17.654043